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Report for CCDS11421.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11421.1 Public Homo sapiens 17 HCRT 24 110 108 CCDS HistoryNCBI Gene:3060Re-query CCDS DB by CCDS ID:11421.1Re-query CCDS DB by GeneID:3060See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11421.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000293330.1 ENSP00000293330.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000293330.1Link to Ensembl Protein Viewer:ENSP00000293330.1Re-query CCDS DB by Nucleotide ID:ENST00000293330Re-query CCDS DB by Protein ID:ENSP00000293330
Original member Current member NCBI NM_001524.1 NP_001515.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001524.1Link to Protein Sequence:NP_001515.1Re-query CCDS DB by Nucleotide ID:NM_001524Re-query CCDS DB by Protein ID:NP_001515Link to BLAST:NP_001515.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001515.1 131 O43612 131 100% 0 0

Chromosomal Locations for CCDS 11421.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 42184154 42184528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42185345 42185365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (396 nt):
ATGAACCTTCCTTCCACAAAGGTCTCCTGGGCCGCCGTGACGCTACTGCTGCTGCTGCTGCTGCTGCCGC
CCGCGCTGTTGTCGTCCGGGGCGGCTGCACAGCCCCTGCCCGACTGCTGTCGTCAAAAGACTTGCTCTTG
CCGCCTCTACGAGCTGCTGCACGGCGCGGGCAATCACGCGGCCGGCATCCTCACGCTGGGCAAGCGGAGG
TCCGGGCCCCCGGGCCTCCAGGGTCGGCTGCAGCGCCTCCTGCAGGCCAGCGGCAACCACGCCGCGGGCA
TCCTGACCATGGGCCGCCGCGCAGGCGCAGAGCCAGCGCCGCGCCCCTGCCTCGGGCGCCGCTGTTCCGC
CCCGGCCGCCGCCTCCGTCGCGCCCGGAGGACAGTCCGGGATCTGA

Translation (131 aa):
MNLPSTKVSWAAVTLLLLLLLLPPALLSSGAAAQPLPDCCRQKTCSCRLYELLHGAGNHAAGILTLGKRR
SGPPGLQGRLQRLLQASGNHAAGILTMGRRAGAEPAPRPCLGRRCSAPAAASVAPGGQSGI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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