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Report for CCDS11762.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11762.1 Public Homo sapiens 17 C1QTNF1 24 110 108 CCDS HistoryNCBI Gene:114897Re-query CCDS DB by CCDS ID:11762.1Re-query CCDS DB by GeneID:114897See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11762.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000311661.4 ENSP00000311265.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000311661.4Link to Ensembl Protein Viewer:ENSP00000311265.4Re-query CCDS DB by Nucleotide ID:ENST00000311661Re-query CCDS DB by Protein ID:ENSP00000311265
Original member Current member EBI ENST00000578229.5 ENSP00000463337.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000578229.5Link to Ensembl Protein Viewer:ENSP00000463337.1Re-query CCDS DB by Nucleotide ID:ENST00000578229Re-query CCDS DB by Protein ID:ENSP00000463337
Original member Current member NCBI NM_198594.4 NP_940996.1 Accepted alive Link to Nucleotide Sequence:NM_198594.4Link to Protein Sequence:NP_940996.1Re-query CCDS DB by Nucleotide ID:NM_198594Re-query CCDS DB by Protein ID:NP_940996Link to BLAST:NP_940996.1

Chromosomal Locations for CCDS 11762.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 79046646 79046694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 79047538 79048088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (600 nt):
ATGTACCCGGCGACCGCCGTGCCCCAGATCAACATCACTATCTTGAAAGGGGAGAAGGGTGACCGCGGAG
ATCGAGGCCTCCAAGGGAAATATGGCAAAACAGGCTCAGCAGGGGCCAGGGGCCACACTGGACCCAAAGG
GCAGAAGGGCTCCATGGGGGCCCCTGGGGAGCGGTGCAAGAGCCACTACGCCGCCTTTTCGGTGGGCCGG
AAGAAGCCCATGCACAGCAACCACTACTACCAGACGGTGATCTTCGACACGGAGTTCGTGAACCTCTACG
ACCACTTCAACATGTTCACCGGCAAGTTCTACTGCTACGTGCCCGGCCTCTACTTCTTCAGCCTCAACGT
GCACACCTGGAACCAGAAGGAGACCTACCTGCACATCATGAAGAACGAGGAGGAGGTGGTGATCTTGTTC
GCGCAGGTGGGCGACCGCAGCATCATGCAAAGCCAGAGCCTGATGCTGGAGCTGCGAGAGCAGGACCAGG
TGTGGGTACGCCTCTACAAGGGCGAACGTGAGAACGCCATCTTCAGCGAGGAGCTGGACACCTACATCAC
CTTCAGTGGCTACCTGGTCAAGCACGCCACCGAGCCCTAG

Translation (199 aa):
MYPATAVPQINITILKGEKGDRGDRGLQGKYGKTGSAGARGHTGPKGQKGSMGAPGERCKSHYAAFSVGR
KKPMHSNHYYQTVIFDTEFVNLYDHFNMFTGKFYCYVPGLYFFSLNVHTWNQKETYLHIMKNEEEVVILF
AQVGDRSIMQSQSLMLELREQDQVWVRLYKGERENAIFSEELDTYITFSGYLVKHATEP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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