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Report for CCDS11780.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11780.1 Public Homo sapiens 17 SLC38A10 24 110 108 CCDS HistoryNCBI Gene:124565Re-query CCDS DB by CCDS ID:11780.1Re-query CCDS DB by GeneID:124565See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11780.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000288439.9 ENSP00000288439.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000288439.9Link to Ensembl Protein Viewer:ENSP00000288439.5Re-query CCDS DB by Nucleotide ID:ENST00000288439Re-query CCDS DB by Protein ID:ENSP00000288439
Original member Current member NCBI NM_138570.4 NP_612637.1 Accepted alive Link to Nucleotide Sequence:NM_138570.4Link to Protein Sequence:NP_612637.1Re-query CCDS DB by Nucleotide ID:NM_138570Re-query CCDS DB by Protein ID:NP_612637Link to BLAST:NP_612637.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_612637.1 780 Q9HBR0-2 780 100% 0 0

Chromosomal Locations for CCDS 11780.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 81251215 81251612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 81252195 81252683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 81253073 81253240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 81260238 81260394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 81270918 81271024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 81272516 81272627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 81275969 81276151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 81277031 81277133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 81280609 81280733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 81282189 81282332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 81283409 81283502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 81284850 81284895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 81289691 81289808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 81294823 81294921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2343 nt):
ATGACCGCGGCCGCCGCCTCCAACTGGGGGCTGATCACGAACATCGTGAACAGCATCGTAGGGGTCAGTG
TCCTCACCATGCCCTTCTGCTTCAAACAGTGCGGCATCGTCCTGGGGGCGCTGCTCTTGGTCTTCTGCTC
ATGGATGACGCACCAGTCGTGCATGTTCTTGGTGAAGTCGGCCAGCCTGAGCAAGCGGAGGACCTACGCC
GGCCTGGCATTCCACGCCTACGGGAAGGCAGGCAAGATGCTGGTGGAGACCAGCATGATCGGGCTGATGC
TGGGCACCTGCATCGCCTTCTACGTCGTGATCGGCGACTTGGGGTCCAACTTCTTTGCCCGGCTGTTCGG
GTTTCAGGTGGGCGGCACCTTCCGCATGTTCCTGCTGTTCGCCGTGTCGCTGTGCATCGTGCTCCCGCTC
AGCCTGCAGCGGAACATGATGGCCTCCATCCAGTCCTTCAGCGCCATGGCCCTCCTCTTCTACACCGTGT
TCATGTTCGTGATCGTGCTCTCCTCTCTCAAGCACGGCCTCTTCAGTGGGCAGTGGCTGCGGCGGGTCAG
CTACGTCCGCTGGGAGGGCGTCTTCCGCTGCATCCCCATCTTCGGCATGTCCTTCGCCTGCCAGTCCCAG
GTGCTGCCCACCTACGACAGCCTGGATGAGCCGTCAGTGAAAACCATGAGCTCCATATTTGCTTCCTCCC
TTAATGTGGTCACCACCTTCTACGTCATGGTGGGGTTTTTCGGCTACGTCAGCTTCACCGAGGCCACGGC
CGGCAACGTGCTCATGCACTTTCCCTCCAACCTGGTGACGGAGATGCTCCGTGTGGGCTTCATGATGTCA
GTGGCTGTGGGCTTCCCCATGATGATCCTGCCATGCAGGCAGGCCCTGAGCACGCTGCTGTGTGAGCAGC
AGCAAAAAGATGGCACCTTTGCAGCAGGGGGCTACATGCCCCCTCTCCGGTTTAAAGCACTTACCCTCTC
TGTGGTGTTTGGAACCATGGTTGGTGGCATCCTTATCCCCAACGTGGAGACCATCCTGGGCCTCACAGGA
GCGACCATGGGAAGCCTCATCTGCTTCATCTGCCCGGCGCTGATCTACAAGAAAATCCACAAGAACGCAC
TTTCCTCCCAGGTGGTGCTGTGGGTCGGCCTGGGCGTCCTGGTGGTGAGCACTGTCACCACACTGTCTGT
GAGCGAGGAGGTCCCCGAGGACTTGGCAGAGGAAGCCCCTGGCGGCCGGCTTGGAGAGGCCGAGGGTTTG
ATGAAGGTGGAGGCAGCGCGGCTCTCAGCCCAGGATCCGGTTGTGGCCGTGGCTGAGGATGGCCGGGAGA
AGCCGAAGCTGCCGAAGGAGAGAGAGGAGCTGGAGCAGGCCCAGATCAAGGGGCCCGTGGATGTGCCTGG
ACGGGAAGATGGCAAGGAGGCACCGGAGGAGGCACAGCTCGATCGCCCTGGGCAAGGGATTGCTGTGCCT
GTGGGCGAGGCCCACCGCCACGAGCCTCCTGTTCCTCACGACAAGGTGGTGGTAGATGAAGGCCAAGACC
GAGAGGTGCCAGAAGAGAACAAACCTCCATCCAGACACGCGGGCGGAAAGGCTCCAGGGGTCCAGGGCCA
GATGGCGCCGCCTCTGCCCGACTCAGAAAGAGAGAAACAAGAGCCGGAGCAGGGAGAGGTTGGGAAGAGG
CCTGGACAGGCCCAGGCCTTGGAGGAGGCGGGTGATCTTCCTGAAGATCCCCAGAAAGTTCCAGAAGCAG
ATGGTCAGCCAGCTGTCCAGCCTGCAAAGGAGGACCTGGGGCCAGGAGACAGGGGCCTGCATCCTCGGCC
CCAGGCAGTGCTGTCTGAGCAGCAGAACGGCCTGGCGGTGGGTGGAGGGGAAAAGGCCAAGGGGGGACCG
CCGCCAGGCAACGCCGCCGGGGACACAGGGCAGCCCGCAGAGGACAGCGACCACGGTGGGAAGCCTCCCC
TCCCAGCGGAGAAGCCGGCTCCAGGGCCTGGGCTGCCGCCCGAGCCTCGCGAGCAGAGGGACGTGGAGCG
AGCGGGTGGAAACCAGGCGGCCAGCCAGCTGGAGGGTAAGGCCTCCGCCCTACAGCCGCCTGCCTCAGGC
CCAGGGAGCGGCAGCCCCCTCCCCCAGCCCTGGGGTGATGCCCAGGTCATCCTCGGGAGCCCTGCCAGGC
CCCCCTTCTCTTTCCAGCCGCCTGCTGAGCAGACCCCTCGGAGAGCTTTCTGCTCCCTTCCCATCAGCAG
CTTGCTTTCTGGGAACCTTTTATCTGCCTTACTCCCCTTTAAACACCTGCGGCATCGTCACATGGCTTGT
GATTACCGTTTTATCTCCCTTGCTCCCCTTTAA

Translation (780 aa):
MTAAAASNWGLITNIVNSIVGVSVLTMPFCFKQCGIVLGALLLVFCSWMTHQSCMFLVKSASLSKRRTYA
GLAFHAYGKAGKMLVETSMIGLMLGTCIAFYVVIGDLGSNFFARLFGFQVGGTFRMFLLFAVSLCIVLPL
SLQRNMMASIQSFSAMALLFYTVFMFVIVLSSLKHGLFSGQWLRRVSYVRWEGVFRCIPIFGMSFACQSQ
VLPTYDSLDEPSVKTMSSIFASSLNVVTTFYVMVGFFGYVSFTEATAGNVLMHFPSNLVTEMLRVGFMMS
VAVGFPMMILPCRQALSTLLCEQQQKDGTFAAGGYMPPLRFKALTLSVVFGTMVGGILIPNVETILGLTG
ATMGSLICFICPALIYKKIHKNALSSQVVLWVGLGVLVVSTVTTLSVSEEVPEDLAEEAPGGRLGEAEGL
MKVEAARLSAQDPVVAVAEDGREKPKLPKEREELEQAQIKGPVDVPGREDGKEAPEEAQLDRPGQGIAVP
VGEAHRHEPPVPHDKVVVDEGQDREVPEENKPPSRHAGGKAPGVQGQMAPPLPDSEREKQEPEQGEVGKR
PGQAQALEEAGDLPEDPQKVPEADGQPAVQPAKEDLGPGDRGLHPRPQAVLSEQQNGLAVGGGEKAKGGP
PPGNAAGDTGQPAEDSDHGGKPPLPAEKPAPGPGLPPEPREQRDVERAGGNQAASQLEGKASALQPPASG
PGSGSPLPQPWGDAQVILGSPARPPFSFQPPAEQTPRRAFCSLPISSLLSGNLLSALLPFKHLRHRHMAC
DYRFISLAPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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