NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS11954.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11954.2 Public Homo sapiens 18 POLI 24 110 108 CCDS HistoryNCBI Gene:11201Re-query CCDS DB by CCDS ID:11954.2Re-query CCDS DB by GeneID:11201See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 11954.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000579534.6 ENSP00000462664.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000579534.6Link to Ensembl Protein Viewer:ENSP00000462664.1Re-query CCDS DB by Nucleotide ID:ENST00000579534Re-query CCDS DB by Protein ID:ENSP00000462664
Original member Current member NCBI NM_007195.3 NP_009126.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_007195.3Link to Protein Sequence:NP_009126.2Re-query CCDS DB by Nucleotide ID:NM_007195Re-query CCDS DB by Protein ID:NP_009126Link to BLAST:NP_009126.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_009126.2 740 Q9UNA4 740 100% 0 0

Chromosomal Locations for CCDS 11954.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 54269547 54269661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 54271360 54271485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 54273926 54274090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 54277703 54277855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 54280667 54280903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 54282837 54283015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 54283922 54284013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 54287281 54287411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 54291833 54292038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 54293649 54294467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2223 nt):
ATGGAGAAGCTGGGGGTGGAGCCGGAGGAGGAAGGCGGCGGCGACGACGACGAGGAAGACGCCGAGGCCT
GG
GCCATGGAACTGGCGGACGTGGGGGCGGCAGCCAGCTCGCAGGGAGTTCATGATCAAGTGTTGCCCAC
A
CCAAATGCTTCATCCAGAGTCATAGTACATGTGGATCTGGATTGCTTTTATGCACAAGTAGAAATGATC
TCA
AATCCAGAGCTAAAAGACAAACCTTTAGGGGTTCAACAGAAATATTTGGTGGTTACCTGCAACTATG
AA
GCTAGGAAACTTGGAGTTAAGAAACTTATGAATGTCAGAGATGCAAAAGAAAAGTGTCCACAGTTGGT
A
TTAGTTAATGGAGAAGACCTGACCCGCTACAGAGAAATGTCTTATAAGGTTACAGAATTACTGGAAGAA
TTT
AGTCCAGTTGTTGAGAGACTTGGATTTGATGAAAATTTTGTGGATCTAACAGAAATGGTTGAGAAGA
GA
CTACAGCAGCTGCAAAGTGATGAACTTTCTGCGGTGACTGTGTCGGGTCATGTATACAATAATCAGTC
T
ATAAACCTGCTTGACGTCTTGCACATCAGACTACTTGTTGGATCTCAGATTGCAGCAGAGATGCGGGAA
GCC
ATGTATAATCAGTTGGGGCTCACTGGCTGTGCTGGAGTGGCTTCTAATAAACTGTTGGCAAAATTAG
TT
TCTGGTGTCTTTAAACCAAATCAACAAACAGTCTTATTACCTGAAAGTTGTCAACATCTTATTCATAG
T
TTGAATCACATAAAGGAAATACCTGGTATTGGCTATAAAACTGCCAAATGTCTTGAAGCACTGGGTATC
AAT
AGTGTGCGTGATCTCCAAACCTTTTCACCCAAAATTTTAGAAAAAGAATTAGGAATTTCAGTTGCTC
AG
CGTATCCAAAAGCTCAGTTTTGGAGAGGATAACTCCCCTGTGATACTCTCAGGACCACCTCAGTCCTT
T
AGTGAAGAAGATTCATTTAAAAAATGTTCATCTGAAGTTGAAGCTAAAAATAAGATTGAAGAACTACTT
GCT
AGTCTTTTAAACAGAGTATGCCAAGATGGAAGGAAGCCTCATACAGTGAGATTAATAATCCGTCGGT
AT
TCCTCTGAGAAGCACTATGGTCGTGAGAGTCGTCAGTGCCCTATTCCTTCACATGTAATTCAGAAATT
A
GGGACAGGAAATTATGATGTGATGACCCCAATGGTTGATATACTTATGAAACTTTTTCGAAATATGGTG
AAT
GTGAAGATGCCATTTCACCTTACCCTTCTAAGTGTGTGCTTCTGCAACCTTAAAGCACTAAATACTG
CT
AAGAAAGGGCTTATTGATTATTATTTAATGCCATCATTATCAACTACTTCACGCTCTGGCAAGCACAG
T
TTTAAAATGAAAGACACTCATATGGAAGATTTTCCCAAAGACAAAGAAACAAACCGGGATTTCCTACCA
AGT
GGAAGAATTGAAAGTACAAGAACTAGGGAGTCTCCACTAGATACCACAAATTTTTCTAAAGAAAAAG
AC
ATTAATGAATTCCCACTCTGTTCACTTCCTGAAGGTGTTGACCAAGAAGTCTTCAAGCAGCTTCCAGT
A
GATATTCAAGAAGAAATCCTTTCTGGAAAATCTAGGGAAAAATTTCAAGGGAAAGGAAGTGTGAGTTGT
CCA
TTACATGCCTCTAGAGGAGTATTATCTTTCTTTTCTAAAAAACAAATGCAAGATATTCCCATAAATC
CT
AGAGATCATTTATCCAGTAGCAAACAGGTATCCTCTGTATCTCCTTGTGAACCGGGAACATCAGGCTT
T
AATAGCAGTAGTTCTTCTTACATGTCTAGCCAAAAGGATTATTCATATTATTTAGATAATAGATTAAAA
GAT
GAACGAATAAGTCAAGGACCTAAAGAACCTCAAGGATTCCACTTTACAAATTCAAACCCTGCTGTGT
CT
GCTTTTCATTCATTTCCAAACTTGCAGAGTGAGCAACTTTTCTCCAGAAACCACACTACAGATAGCCA
T
AAGCAAACAGTAGCAACAGACTCTCATGAAGGACTTACAGAAAATAGAGAGCCAGATTCTGTTGATGAG
AAA
ATTACTTTCCCTTCTGACATTGATCCTCAAGTTTTCTATGAACTACCAGAAGCAGTACAAAAGGAAC
TG
CTGGCAGAGTGGAAGAGAGCAGGATCAGATTTCCACATTGGACATAAATAA


Translation (740 aa):
MEKLGVEPEEEGGGDDDEEDAEAWAMELADVGAAASSQGVHDQVLPTPNASSRVIVHVDLDCFYAQVEMI
S
NPELKDKPL
GVQQKYLVVTCNYEARKLGVKKLMNVRDAKEKCPQLVLVNGEDLTRYREMSYKVTELLEE
F
SPVVERLGFDENFVDLTEMVEKRLQQLQSDELSAVTVSGHVYNNQ
SINLLDVLHIRLLVGSQIAAEMRE
A
MYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLNHIKEIP
GIGYKTAKCLEALGI
N
SVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPVILSGPPQ
SFSEEDSFKKCSSEVEAKNKIEELL
A
SLLN
RVCQDGRKPHTVRLIIRRYSSEKHYGRESRQCPIPSHVIQKLGTGNYDVMTPMVDILMKLFRNMV
N
VKMPFHLTLLSVCFCNLKALNTAKKGLIDYYLMPSLSTTSRSGKHSF
KMKDTHMEDFPKDKETNRDFLP
S
GRIESTRTRESPLDTTNFSKEKDINEFPLCSLPEGVDQEVFKQLPVDIQEEILSGKSREKFQGKGSVSC
P
LHASRGVLSFFSKKQMQDIPINPRDHLSSSKQVSSVSPCEPGTSGFNSSSSSYMSSQKDYSYYLDNRLK
D
ERISQGPKEPQGFHFTNSNPAVSAFHSFPNLQSEQLFSRNHTTDSHKQTVATDSHEGLTENREPDSVDE
K
ITFPSDIDPQVFYELPEAVQKELLAEWKRAGSDFHIGHK




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser