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Report for CCDS12110.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12110.1 Public Homo sapiens 19 APBA3 24 110 108 CCDS HistoryNCBI Gene:9546Re-query CCDS DB by CCDS ID:12110.1Re-query CCDS DB by GeneID:9546See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12110.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000316757.4 ENSP00000315136.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000316757.4Link to Ensembl Protein Viewer:ENSP00000315136.2Re-query CCDS DB by Nucleotide ID:ENST00000316757Re-query CCDS DB by Protein ID:ENSP00000315136
Original member Current member NCBI NM_004886.4 NP_004877.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004886.4Link to Protein Sequence:NP_004877.1Re-query CCDS DB by Nucleotide ID:NM_004886Re-query CCDS DB by Protein ID:NP_004877Link to BLAST:NP_004877.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004877.1 575 O96018 575 100% 0 0

Chromosomal Locations for CCDS 12110.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 3751026 3751097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3751189 3751329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3751434 3751553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3752508 3752720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3752820 3752990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3753765 3753926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3754019 3754105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3754195 3754340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3759561 3759600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3759689 3760264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1728 nt):
ATGGACTTCCCCACAATTTCCCGATCCCCTTCGGGGCCTCCAGCCATGGACTTGGAGGGGCCCAGGGACA
TTCTTGTGCCTTCGGAGGACCTCACCCCTGACAGCCAGTGGGACCCTATGCCAGGAGGCCCCGGCAGCCT
CAGTCGGATGGAACTTGATGAGTCAAGCCTTCAGGAGCTGGTGCAGCAGTTTGAAGCTCTGCCAGGCGAT
CTGGTGGGCCCATCCCCAGGTGGAGCCCCCTGTCCCCTACACATTGCCACAGGCCATGGCCTGGCCTCCC
AGGAGATTGCTGATGCCCACGGGCTCCTGTCTGCCGAAGCTGGCCGGGATGACCTGCTGGGCCTCTTGCA
CTGCGAGGAATGCCCGCCTTCCCAGACTGGTCCTGAAGAGCCTCTAGAGCCTGCCCCCCGACTGTTGCAG
CCCCCTGAGGACCCAGATGAGGATTCTGACTCCCCAGAATGGGTGGAGGGGGCCTCTGCTGAGCAGGAGG
GCAGCAGGAGCTCAAGCAGTTCCCCGGAACCCTGGCTGGAGACGGTGCCTCTAGTCACACCTGAAGAGCC
ACCCGCTGGTGCCCAGAGCCCCGAGACCCTGGCTTCCTACCCTGCCCCCCAGGAGGTGCCTGGTCCCTGT
GACCATGAAGACCTCCTGGACGGTGTCATATTTGGGGCCAGGTACCTGGGGTCCACCCAGCTGGTGTCGG
AACGGAACCCGCCCACCAGCACGCGCATGGCCCAGGCCCGGGAGGCCATGGACCGCGTCAAGGCCCCCGA
TGGGGAGACCCAGCCCATGACGGAGGTGGACCTGTTCGTCTCCACCAAGAGGATCAAGGTCTTGACAGCG
GACTCCCAGGAGGCCATGATGGACCACGCCCTGCATACCATCTCCTACACAGCCGACATCGGCTGCGTGC
TGGTGCTGATGGCGCGGCGGCGGCTGGCACGGAGGCCGGCACCCCAGGACCACGGCCGCCGCCTCTACAA
GATGCTCTGCCACGTATTCTACGCGGAGGACGCCCAGCTCATCGCCCAGGCCATTGGCCAGGCCTTCGCC
GCCGCCTACAGCCAGTTCCTACGGGAAAGCGGTATTGACCCCAGCCAGGTGGGCGTGCACCCGAGCCCAG
GCGCCTGCCACCTCCATAATGGGGACCTGGACCACTTCTCCAACAGTGACAACTGCCGGGAGGTGCACCT
CGAGAAGCGGCGAGGGGAGGGCCTGGGCGTGGCCCTGGTGGAGTCGGGCTGGGGCTCCCTGCTGCCCACA
GCCGTCATCGCCAACCTGCTGCACGGGGGGCCTGCTGAGCGCTCGGGGGCCCTCAGCATCGGGGACCGCC
TGACCGCCATCAACGGGACCAGCCTGGTGGGGCTGCCCCTGGCTGCGTGCCAGGCCGCTGTCCGCGAGAC
GAAGTCGCAGACGTCGGTGACACTCAGCATCGTCCACTGCCCTCCCGTCACCACCGCCATCATCCACCGG
CCCCACGCCCGCGAGCAGCTGGGCTTCTGCGTGGAGGACGGCATCATCTGCAGCCTCCTCCGTGGTGGCA
TCGCCGAGCGTGGGGGCATCCGCGTCGGCCACCGCATCATTGAGATCAATGGGCAGAGTGTGGTGGCCAC
GCCACACGCCCGCATCATCGAGCTGCTCACCGAGGCCTATGGCGAGGTGCATATCAAGACGATGCCAGCT
GCCACATATCGCCTCCTTACAGGCCAGGAGCAGCCCGTGTACCTGTGA

Translation (575 aa):
MDFPTISRSPSGPPAMDLEGPRDILVPSEDLTPDSQWDPMPGGPGSLSRMELDESSLQELVQQFEALPGD
LVGPSPGGAPCPLHIATGHGLASQEIADAHGLLSAEAGRDDLLGLLHCEECPPSQTGPEEPLEPAPRLLQ
PPEDPDEDSDSPEWVEGASAEQEGSRSSSSSPEPWLETVPLVTPEEPPAGAQSPETLASYPAPQEVPGPC
DHEDLLDGVIFGARYLGSTQLVSERNPPTSTRMAQAREAMDRVKAPDGETQPMTEVDLFVSTKRIKVLTA
DSQEAMMDHALHTISYTADIGCVLVLMARRRLARRPAPQDHGRRLYKMLCHVFYAEDAQLIAQAIGQAFA
AAYSQFLRESGIDPSQVGVHPSPGACHLHNGDLDHFSNSDNCREVHLEKRRGEGLGVALVESGWGSLLPT
AVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVRETKSQTSVTLSIVHCPPVTTAIIHR
PHAREQLGFCVEDGIICSLLRGGIAERGGIRVGHRIIEINGQSVVATPHARIIELLTEAYGEVHIKTMPA
ATYRLLTGQEQPVYL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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