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Report for CCDS12137.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12137.1 Public Homo sapiens 19 PLIN3 24 110 108 CCDS HistoryNCBI Gene:10226Re-query CCDS DB by CCDS ID:12137.1Re-query CCDS DB by GeneID:10226See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12137.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000221957.9 ENSP00000221957.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000221957.9Link to Ensembl Protein Viewer:ENSP00000221957.3Re-query CCDS DB by Nucleotide ID:ENST00000221957Re-query CCDS DB by Protein ID:ENSP00000221957
Original member Current member NCBI NM_005817.5 NP_005808.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005817.5Link to Protein Sequence:NP_005808.3Re-query CCDS DB by Nucleotide ID:NM_005817Re-query CCDS DB by Protein ID:NP_005808Link to BLAST:NP_005808.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005808.3 434 O60664-1 434 100% 0 0

Chromosomal Locations for CCDS 12137.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 4839192 4839536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4844668 4844793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4847691 4847890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4852016 4852301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4859590 4859672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4859826 4860024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4861329 4861394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1305 nt):
ATGTCTGCCGACGGGGCAGAGGCTGATGGCAGCACCCAGGTGACAGTGGAAGAACCGGTACAGCAGCCCA
GTGTGGTGGACCGTGTGGCCAGCATGCCTCTGATCAGCTCCACCTGCGACATGGTGTCCGCAGCCTATGC
CTCCACCAAGGAGAGCTACCCGCACATCAAGACTGTCTGCGACGCAGCAGAGAAGGGAGTGAGGACCCTC
ACGGCGGCTGCTGTCAGCGGGGCTCAGCCGATCCTCTCCAAGCTGGAGCCCCAGATTGCATCAGCCAGCG
AATACGCCCACAGGGGGCTGGACAAGTTGGAGGAGAACCTCCCCATCCTGCAGCAGCCCACGGAGAAGGT
CCTGGCGGACACCAAGGAGCTTGTGTCGTCTAAGGTGTCGGGGGCCCAAGAGATGGTGTCTAGCGCCAAG
GACACGGTGGCCACCCAATTGTCGGAGGCGGTGGACGCGACCCGCGGTGCTGTGCAGAGCGGCGTGGACA
AGACAAAGTCCGTAGTGACCGGCGGCGTCCAATCGGTCATGGGCTCCCGCTTGGGCCAGATGGTGTTGAG
TGGGGTCGACACGGTGCTGGGGAAGTCGGAGGAGTGGGCGGACAACCACCTGCCCCTTACGGATGCCGAA
CTGGCCCGCATCGCCACATCCCTGGATGGCTTTGACGTCGCGTCCGTGCAGCAGCAGCGGCAGGAACAGA
GCTACTTCGTACGTCTGGGCTCCCTGTCGGAGAGGCTGCGGCAGCACGCCTATGAGCACTCGCTGGGCAA
GCTTCGAGCCACCAAGCAGAGGGCACAGGAGGCTCTGCTGCAGCTGTCGCAGGTCCTAAGCCTGATGGAA
ACTGTCAAGCAAGGCGTTGATCAGAAGCTGGTGGAAGGCCAGGAGAAGCTGCACCAGATGTGGCTCAGCT
GGAACCAGAAGCAGCTCCAGGGCCCCGAGAAGGAGCCGCCCAAGCCAGAGCAGGTCGAGTCCCGGGCGCT
CACCATGTTCCGGGACATTGCCCAGCAACTGCAGGCCACCTGTACCTCCCTGGGGTCCAGCATTCAGGGC
CTCCCCACCAATGTGAAGGACCAGGTGCAGCAGGCCCGCCGCCAGGTGGAGGACCTCCAGGCCACGTTTT
CCAGCATCCACTCCTTCCAGGACCTGTCCAGCAGCATTCTGGCCCAGAGCCGTGAGCGTGTCGCCAGCGC
CCGCGAGGCCCTGGACCACATGGTGGAATATGTGGCCCAGAACACACCTGTCACGTGGCTCGTGGGACCC
TTTGCCCCTGGAATCACTGAGAAAGCCCCGGAGGAGAAGAAGTAG

Translation (434 aa):
MSADGAEADGSTQVTVEEPVQQPSVVDRVASMPLISSTCDMVSAAYASTKESYPHIKTVCDAAEKGVRTL
TAAAVSGAQPILSKLEPQIASASEYAHRGLDKLEENLPILQQPTEKVLADTKELVSSKVSGAQEMVSSAK
DTVATQLSEAVDATRGAVQSGVDKTKSVVTGGVQSVMGSRLGQMVLSGVDTVLGKSEEWADNHLPLTDAE
LARIATSLDGFDVASVQQQRQEQSYFVRLGSLSERLRQHAYEHSLGKLRATKQRAQEALLQLSQVLSLME
TVKQGVDQKLVEGQEKLHQMWLSWNQKQLQGPEKEPPKPEQVESRALTMFRDIAQQLQATCTSLGSSIQG
LPTNVKDQVQQARRQVEDLQATFSSIHSFQDLSSSILAQSRERVASAREALDHMVEYVAQNTPVTWLVGP
FAPGITEKAPEEKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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