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Report for CCDS12407.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12407.2 Under review, update Homo sapiens 19 LPAR2 24 110 108 CCDS HistoryNCBI Gene:9170Re-query CCDS DB by CCDS ID:12407.2Re-query CCDS DB by GeneID:9170See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 12407.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000407877.8 ENSP00000384665.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000407877.8Link to Ensembl Protein Viewer:ENSP00000384665.3Re-query CCDS DB by Nucleotide ID:ENST00000407877Re-query CCDS DB by Protein ID:ENSP00000384665
Original member Current member EBI ENST00000542587.5 ENSP00000443256.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000542587.5Link to Ensembl Protein Viewer:ENSP00000443256.2Re-query CCDS DB by Nucleotide ID:ENST00000542587Re-query CCDS DB by Protein ID:ENSP00000443256
Original member Current member EBI ENST00000586703.1 ENSP00000465280.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000586703.1Link to Ensembl Protein Viewer:ENSP00000465280.2Re-query CCDS DB by Nucleotide ID:ENST00000586703Re-query CCDS DB by Protein ID:ENSP00000465280
Original member Current member NCBI NM_001395660.1 NP_001382589.1 MANE Select Pending alive Link to Nucleotide Sequence:NM_001395660.1Link to Protein Sequence:NP_001382589.1Re-query CCDS DB by Nucleotide ID:NM_001395660Re-query CCDS DB by Protein ID:NP_001382589Link to BLAST:NP_001382589.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001382589.1 348 Q9HBW0 348 100% 0 0

Chromosomal Locations for CCDS 12407.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 19624256 19624569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19626543 19627275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1047 nt):
ATGGGCCAGTGCTACTACAACGAGACCATCGGCTTCTTCTATAACAACAGTGGCAAAGAGCTCAGCTCCC
AC
TGGCGGCCCAAGGATGTGGTCGTGGTGGCACTGGGGCTGACCGTCAGCGTGCTGGTGCTGCTGACCAA
T
CTGCTGGTCATAGCAGCCATCGCCTCCAACCGCCGCTTCCACCAGCCCATCTACTACCTGCTCGGCAAT
CTG
GCCGCGGCTGACCTCTTCGCGGGCGTGGCCTACCTCTTCCTCATGTTCCACACTGGTCCCCGCACAG
CC
CGACTTTCACTTGAGGGCTGGTTCCTGCGGCAGGGCTTGCTGGACACAAGCCTCACTGCGTCGGTGGC
C
ACACTGCTGGCCATCGCCGTGGAGCGGCACCGCAGTGTGATGGCCGTGCAGCTGCACAGCCGCCTGCCC
CGT
GGCCGCGTGGTCATGCTCATTGTGGGCGTGTGGGTGGCTGCCCTGGGCCTGGGGCTGCTGCCTGCCC
AC
TCCTGGCACTGCCTCTGTGCCCTGGACCGCTGCTCACGCATGGCACCCCTGCTCAGCCGCTCCTATTT
G
GCCGTCTGGGCTCTGTCGAGCCTGCTTGTCTTCCTGCTCATGGTGGCTGTGTACACCCGCATTTTCTTC
TAC
GTGCGGCGGCGAGTGCAGCGCATGGCAGAGCATGTCAGCTGCCACCCCCGCTACCGAGAGACCACGC
TC
AGCCTGGTCAAGACTGTTGTCATCATCCTGGGGGCGTTCGTGGTCTGCTGGACACCAGGCCAGGTGGT
A
CTGCTCCTGGATGGTTTAGGCTGTGAGTCCTGCAATGTCCTGGCTGTAGAAAAGTACTTCCTACTGTTG
GCC
GAGGCCAACTCCCTGGTCAATGCTGCTGTGTACTCTTGCCGAGATGCTGAGATGCGCCGCACCTTCC
GC
CGCCTTCTCTGCTGCGCGTGCCTCCGCCAGTCCACCCGCGAGTCTGTCCACTATACATCCTCTGCCCA
G
GGAGGTGCCAGCACTCGCATCATGCTTCCCGAGAACGGCCACCCACTGATGGACTCCACCCTTTAG


Translation (348 aa):
MGQCYYNETIGFFYNNSGKELSSHWRPKDVVVVALGLTVSVLVLLTNLLVIAAIASNRRFHQPIYYLLGN
L
AAADLFAGVAYLFLMFHTGPRTARLSLEGWFLRQGLLDTSLTASVATLLAIAVERHRSVMAVQLHSRLP
R
GRVVMLIVGVWVAALGLGLLPAHSWHCLCALDRCSRMAPLLSRSYLAVWALSSLLVFLLMVAVYTRIFF
Y
VRRRVQRMAEHVSCHPRYRETTLSLVKTVVIIL
GAFVVCWTPGQVVLLLDGLGCESCNVLAVEKYFLLL
A
EANSLVNAAVYSCRDAEMRRTFRRLLCCACLRQSTRESVHYTSSAQGGASTRIMLPENGHPLMDSTL




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser