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Report for CCDS12422.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12422.1 Public Homo sapiens 19 DPY19L3 24 110 108 CCDS HistoryNCBI Gene:147991Re-query CCDS DB by CCDS ID:12422.1Re-query CCDS DB by GeneID:147991See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12422.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000342179.9 ENSP00000344937.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000342179.9Link to Ensembl Protein Viewer:ENSP00000344937.4Re-query CCDS DB by Nucleotide ID:ENST00000342179Re-query CCDS DB by Protein ID:ENSP00000344937
Original member Current member EBI ENST00000392250.7 ENSP00000376081.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000392250.7Link to Ensembl Protein Viewer:ENSP00000376081.2Re-query CCDS DB by Nucleotide ID:ENST00000392250Re-query CCDS DB by Protein ID:ENSP00000376081
Original member Current member NCBI NM_001172774.2 NP_001166245.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001172774.2Link to Protein Sequence:NP_001166245.1Re-query CCDS DB by Nucleotide ID:NM_001172774Re-query CCDS DB by Protein ID:NP_001166245Link to BLAST:NP_001166245.1
Original member Current member NCBI NM_207325.3 NP_997208.2 Accepted alive Link to Nucleotide Sequence:NM_207325.3Link to Protein Sequence:NP_997208.2Re-query CCDS DB by Nucleotide ID:NM_207325Re-query CCDS DB by Protein ID:NP_997208Link to BLAST:NP_997208.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001166245.1 716 Q6ZPD9-1 716 100% 0 0
NP_997208.2 716 Q6ZPD9-1 716 100% 0 0

Chromosomal Locations for CCDS 12422.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 32408254 32408356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32411239 32411372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32432716 32432806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32436446 32436567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32437194 32437339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32439112 32439235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32439776 32439910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32453145 32453276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32454939 32455040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32458100 32458173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32458351 32458509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32463366 32463488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32463869 32463980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32464728 32464784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32468731 32468813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32477522 32477654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32480399 32480557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32482079 32482240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2151 nt):
ATGATGTCCATCCGGCAAAGAAGAGAAATAAGAGCCACAGAAGTTTCTGAAGACTTTCCAGCCCAAGAAG
AAAATGTGAAGTTGGAAAATAAATTGCCATCTGGTTGTACCAGTAGAAGATTATGGAAGATTTTGTCATT
GACAATTGGTGGAACCATTGCCCTTTGCATTGGACTTCTTACATCTGTCTACCTTGCCACGTTACATGAA
AATGATTTATGGTTTTCTAATATTAAGGAAGTGGAGCGAGAAATCTCATTCAGAACAGAGTGTGGCCTGT
ATTACTCCTACTACAAGCAGATGCTGCAGGCTCCAACCCTCGTGCAAGGTTTTCATGGCCTAATATATGA
TAATAAAACTGAATCTATGAAGACAATTAACCTCCTTCAGCGAATGAATATTTACCAAGAGGTTTTTCTC
AGTATTTTATATAGAGTTCTACCCATACAGAAATATTTAGAGCCAGTTTATTTTTATATTTACACCTTAT
TTGGGCTCCAGGCGATCTATGTCACAGCTCTCTACATAACCAGCTGGCTACTCAGTGGTACATGGCTGTC
AGGACTGTTGGCAGCTTTCTGGTATGTCACAAATAGAATAGATACCACAAGAGTTGAGTTTACCATCCCA
CTGAGGGAGAACTGGGCGCTGCCATTCTTTGCAATTCAGATAGCAGCAATTACATATTTCCTGAGACCAA
ACTTACAGCCTCTTTCTGAAAGGCTGACACTTCTTGCCATTTTCATATCAACTTTTCTCTTTAGTCTGAC
ATGGCAATTTAATCAATTTATGATGCTGATGCAAGCATTAGTGCTGTTCACACTGGACTCCCTGGACATG
CTGCCAGCAGTGAAGGCGACATGGCTGTATGGAATACAGATAACAAGTTTACTCCTGGTCTGCATTCTTC
AGTTTTTTAATTCCATGATTCTTGGATCACTGCTTATCAGTTTTAACCTTTCAGTATTCATTGCAAGAAA
ACTTCAGAAAAATCTGAAAACTGGAAGCTTCCTTAATAGGCTTGGGAAACTTTTGTTACATTTATTTATG
GTTTTATGTTTGACACTTTTTCTCAACAACATAATTAAGAAAATTCTTAACCTGAAGTCAGATGAACACA
TATTTAAATTTCTGAAGGCAAAATTTGGGCTTGGAGCAACAAGGGATTTTGATGCAAATCTCTATCTGTG
TGAAGAAGCTTTTGGCCTCCTGCCTTTTAATACATTTGGAAGGCTTTCAGATACTCTGCTTTTTTATGCT
TACATATTCGTTCTGTCCATCACAGTGATTGTAGCATTCGTTGTTGCCTTTCATAATCTCAGTGATTCTA
CAAATCAACAATCCGTGGGTAAAATGGAAAAAGGCACAGTTGACCTGAAACCAGAAACTGCCTACAACTT
AATACATACCATTCTGTTTGGATTCTTGGCATTGAGTACAATGAGAATGAAGTACCTCTGGACGTCACAC
ATGTGTGTGTTCGCATCATTCGGCCTATGTAGCCCTGAAATATGGGAGTTACTTCTGAAGTCAGTCCATC
TTTATAACCCAAAGAGGATATGTATAATGCGATATTCAGTACCGATATTAATACTGCTGTATCTATGCTA
TAAGTTCTGGCCAGGAATGATGGATGAACTCTCCGAGTTGAGAGAATTCTATGATCCAGATACAGTGGAG
CTGATGAACTGGATTAACTCTAACACTCCAAGAAAGGCTGTGTTTGCGGGAAGCATGCAGTTGCTGGCCG
GAGTCAAGCTGTGCACGGGAAGGACCCTAACCAACCACCCGCACTATGAAGACAGCAGCCTGAGAGAGCG
GACCAGAGCGGTTTATCAGATATATGCCAAGAGGGCACCAGAGGAAGTGCATGCCCTCCTAAGGTCCTTC
GGCACTGACTACGTAATCCTGGAAGACAGCATCTGCTACGAGCGGAGGCACCGCCGGGGCTGCCGACTCC
GGGACCTGCTGGACATTGCCAACGGCCACATGATGGATGGCCCAGGAGAGAATGATCCTGATTTGAAACC
TGCAGACCACCCTCGCTTCTGTGAAGAGATCAAAAGAAACCTGCCTCCCTACGTGGCCTACTTCACCAGA
GTGTTCCAGAACAAAACCTTCCACGTTTACAAGCTGTCCAGAAACAAGTAG

Translation (716 aa):
MMSIRQRREIRATEVSEDFPAQEENVKLENKLPSGCTSRRLWKILSLTIGGTIALCIGLLTSVYLATLHE
NDLWFSNIKEVEREISFRTECGLYYSYYKQMLQAPTLVQGFHGLIYDNKTESMKTINLLQRMNIYQEVFL
SILYRVLPIQKYLEPVYFYIYTLFGLQAIYVTALYITSWLLSGTWLSGLLAAFWYVTNRIDTTRVEFTIP
LRENWALPFFAIQIAAITYFLRPNLQPLSERLTLLAIFISTFLFSLTWQFNQFMMLMQALVLFTLDSLDM
LPAVKATWLYGIQITSLLLVCILQFFNSMILGSLLISFNLSVFIARKLQKNLKTGSFLNRLGKLLLHLFM
VLCLTLFLNNIIKKILNLKSDEHIFKFLKAKFGLGATRDFDANLYLCEEAFGLLPFNTFGRLSDTLLFYA
YIFVLSITVIVAFVVAFHNLSDSTNQQSVGKMEKGTVDLKPETAYNLIHTILFGFLALSTMRMKYLWTSH
MCVFASFGLCSPEIWELLLKSVHLYNPKRICIMRYSVPILILLYLCYKFWPGMMDELSELREFYDPDTVE
LMNWINSNTPRKAVFAGSMQLLAGVKLCTGRTLTNHPHYEDSSLRERTRAVYQIYAKRAPEEVHALLRSF
GTDYVILEDSICYERRHRRGCRLRDLLDIANGHMMDGPGENDPDLKPADHPRFCEEIKRNLPPYVAYFTR
VFQNKTFHVYKLSRNK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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