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Report for CCDS12433.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
12433.1 |
Public |
Homo sapiens |
19 |
CHST8 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:64377](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:12433.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:64377](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 19 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 12433.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000262622.4 |
ENSP00000262622.3 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000262622.4](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000262622.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000262622](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000262622](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000434302.5 |
ENSP00000392604.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000434302.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000392604.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000434302](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000392604](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000438847.7 |
ENSP00000393879.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000438847.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000393879.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000438847](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000393879](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000650847.1 |
ENSP00000499084.1 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000650847.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000499084.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000650847](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000499084](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001127895.2 |
NP_001121367.1 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001127895.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001121367.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001127895](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001121367](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001121367.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001127896.2 |
NP_001121368.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001127896.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001121368.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001127896](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001121368](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001121368.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_022467.3 |
NP_071912.2 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_022467.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_071912.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_022467](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_071912](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_071912.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 12433.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1275 nt): ATGACCCTGCGACCTGGAACAATGCGGCTGGCCTGCATGTTCTCTTCCATCCTGCTGTTCGGAGCTGCAG GCCTCCTCCTCTTCATCAGCCTGCAGGACCCTACGGAGCTCGCCCCCCAGCAGGTGCCAGGAATAAAGTT CAACATCAGGCCAAGGCAGCCCCACCACGACCTCCCACCAGGCGGCTCCCAGGATGGTGACTTGAAGGAA CCCACAGAGAGGGTCACTCGGGACTTATCCAGTGGGGCCCCGAGGGGCCGCAACCTGCCAGCGCCTGACC AGCCTCAACCCCCGCTGCAGAGGGGAACCCGTCTGCGGCTCCGCCAGCGCCGTCGCCGTCTGCTCATCAA GAAAATGCCAGCTGCGGCGACCATCCCGGCCAACAGCTCGGACGCGCCCTTCATCCGGCCGGGACCCGGG ACGCTGGATGGCCGCTGGGTCAGCCTGCACCGGAGCCAGCAGGAGCGCAAGCGGGTGATGCAGGAGGCCT GCGCCAAGTACCGGGCGAGCAGCAGCCGCCGGGCCGTCACGCCCCGCCACGTGTCCCGTATCTTCGTGGA GGACCGCCACCGCGTGCTCTACTGCGAGGTGCCCAAGGCCGGCTGCTCCAATTGGAAGCGGGTGCTCATG GTGCTGGCCGGCCTGGCCTCGTCCACTGCCGACATCCAGCACAACACCGTCCACTATGGCAGCGCTCTCA AGCGCCTGGACACCTTCGACCGCCAGGGTATCTTGCACCGTCTCAGCACCTACACCAAGATGCTCTTTGT CCGCGAGCCCTTCGAGAGGCTGGTGTCCGCCTTCCGCGACAAGTTTGAGCACCCCAACAGCTACTATCAC CCGGTCTTCGGCAAGGCCATCCTGGCCCGGTACCGCGCCAATGCCTCTCGGGAGGCCCTGCGGACCGGCT CTGGGGTGCGTTTTCCCGAGTTCGTCCAGTACCTGCTGGACGTGCACCGGCCCGTGGGGATGGACATTCA CTGGGACCATGTCAGCCGGCTCTGCAGCCCCTGCCTCATCGACTACGATTTCGTAGGCAAGTTCGAGAGC ATGGAGGACGATGCCAACTTCTTCCTGAGCCTCATCCGCGCGCCGCGGAACCTGACCTTCCCCCGGTTCA AGGACCGGCACTCGCAGGAGGCGCGGACCACAGCGAGGATCGCCCACCAGTACTTCGCCCAACTCTCGGC CCTGCAAAGGCAGCGCACCTACGACTTCTACTACATGGATTACCTGATGTTCAACTATTCCAAGCCCTTT GCAGATCTGTACTGA
Translation (424 aa): MTLRPGTMRLACMFSSILLFGAAGLLLFISLQDPTELAPQQVPGIKFNIRPRQPHHDLPPGGSQDGDLKE PTERVTRDLSSGAPRGRNLPAPDQPQPPLQRGTRLRLRQRRRRLLIKKMPAAATIPANSSDAPFIRPGPG TLDGRWVSLHRSQQERKRVMQEACAKYRASSSRRAVTPRHVSRIFVEDRHRVLYCEVPKAGCSNWKRVLM VLAGLASSTADIQHNTVHYGSALKRLDTFDRQGILHRLSTYTKMLFVREPFERLVSAFRDKFEHPNSYYH PVFGKAILARYRANASREALRTGSGVRFPEFVQYLLDVHRPVGMDIHWDHVSRLCSPCLIDYDFVGKFES MEDDANFFLSLIRAPRNLTFPRFKDRHSQEARTTARIAHQYFAQLSALQRQRTYDFYYMDYLMFNYSKPF ADLY
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