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Report for CCDS12578.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12578.1 Public Homo sapiens 19 CCDC97 24 110 108 CCDS HistoryNCBI Gene:90324Re-query CCDS DB by CCDS ID:12578.1Re-query CCDS DB by GeneID:90324See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12578.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000269967.4 ENSP00000269967.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000269967.4Link to Ensembl Protein Viewer:ENSP00000269967.2Re-query CCDS DB by Nucleotide ID:ENST00000269967Re-query CCDS DB by Protein ID:ENSP00000269967
Original member Current member NCBI NM_052848.3 NP_443080.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_052848.3Link to Protein Sequence:NP_443080.1Re-query CCDS DB by Nucleotide ID:NM_052848Re-query CCDS DB by Protein ID:NP_443080Link to BLAST:NP_443080.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_443080.1 343 Q96F63 343 100% 0 0

Chromosomal Locations for CCDS 12578.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 41310311 41310356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41316384 41316839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41319574 41319852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41320341 41320470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41322595 41322715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1032 nt):
ATGGAGGCCGTGGCGACGGCGACGGCGGCGAAGGAACCCGATAAGGGCTGCATAGAGCCTGGACCTGGGC
ACTGGGGTGAGCTGAGCCGGACACCAGTCCCATCTAAACCCCAGGACAAAGTGGAAGCAGCTGAGGCAAC
ACCAGTGGCCCTGGACAGTGACACCTCCGGGGCTGAAAATGCAGCAGTGAGTGCTATGCTGCACGCTGTA
GCCGCCAGCCGCCTGCCTGTTTGCAGCCAGCAGCAGGGTGAACCCGACTTGACAGAGCATGAGAAAGTGG
CCATCCTGGCCCAGCTGTACCACGAGAAGCCACTGGTGTTCCTGGAGCGCTTCCGCACAGGCCTCCGTGA
GGAGCATCTGGCCTGCTTTGGCCACGTGCGTGGCGACCACCGTGCAGACTTCTACTGTGCTGAGGTGGCC
CGGCAGGGCACTGCCCGGCCCCGCACCCTGCGTACCCGCCTGCGTAACCGGCGCTATGCTGCCCTGCGAG
AGCTGATCCAAGGGGGCGAGTACTTCAGTGATGAGCAGATGCGGTTCCGGGCCCCCCTGCTATATGAGCA
GTACATCGGGCAGTATCTCACCCAGGAGGAGCTCAGTGCCCGCACCCCAACCCACCAGCCCCCCAAGCCC
GGGTCCCCCGGGAGACCTGCTTGCCCGCTCTCCAACTTGCTGCTCCAGTCCTACGAGGAGCGGGAGCTAC
AGCAGCGTCTGCTCCAACAGCAGGAGGAGGAGGAGGCCTGCTTGGAGGAAGAGGAAGAGGAGGAGGACAG
TGACGAGGAAGACCAGAGGTCAGGCAAGGACTCGGAGGCCTGGGTTCCCGACTCGGAGGAGAGGCTGATC
CTGCGAGAGGAGTTCACCAGCCGCATGCACCAGCGCTTCCTAGATGGCAAGGACGGGGACTTTGACTACA
GCACAGTAGACGACAACCCCGACTTCGACAACCTCGACATCGTGGCACGGGATGAGGAGGAGAGGTACTT
TGATGAGGAAGAACCTGAGGATGCGCCCAGCCCAGAGCTGGATGGGGACTGA

Translation (343 aa):
MEAVATATAAKEPDKGCIEPGPGHWGELSRTPVPSKPQDKVEAAEATPVALDSDTSGAENAAVSAMLHAV
AASRLPVCSQQQGEPDLTEHEKVAILAQLYHEKPLVFLERFRTGLREEHLACFGHVRGDHRADFYCAEVA
RQGTARPRTLRTRLRNRRYAALRELIQGGEYFSDEQMRFRAPLLYEQYIGQYLTQEELSARTPTHQPPKP
GSPGRPACPLSNLLLQSYEERELQQRLLQQQEEEEACLEEEEEEEDSDEEDQRSGKDSEAWVPDSEERLI
LREEFTSRMHQRFLDGKDGDFDYSTVDDNPDFDNLDIVARDEEERYFDEEEPEDAPSPELDGD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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