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Report for CCDS12679.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12679.1 Public Homo sapiens 19 NOVA2 24 110 108 CCDS HistoryNCBI Gene:4858Re-query CCDS DB by CCDS ID:12679.1Re-query CCDS DB by GeneID:4858See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 12679.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000263257.6 ENSP00000263257.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000263257.6Link to Ensembl Protein Viewer:ENSP00000263257.4Re-query CCDS DB by Nucleotide ID:ENST00000263257Re-query CCDS DB by Protein ID:ENSP00000263257
Original member Current member NCBI NM_002516.4 NP_002507.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002516.4Link to Protein Sequence:NP_002507.1Re-query CCDS DB by Nucleotide ID:NM_002516Re-query CCDS DB by Protein ID:NP_002507Link to BLAST:NP_002507.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002507.1 492 Q9UNW9 492 100% 0 0

Chromosomal Locations for CCDS 12679.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 45939863 45940945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45953780 45953946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45961010 45961153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45973267 45973351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1479 nt):
ATGGAGCCCGAGGCCCCGGATTCCCGCAAGAGGCCCCTCGAAACGCCCCCCGAGGTGGTCTGCACCAAGC
GCAGCAACACGGGAGAGGAAGGCGAATACTTCCTGAAGGTGCTGATCCCCAGCTACGCGGCGGGCTCCAT
CATTGGCAAGGGCGGGCAGACCATCGTGCAGCTGCAGAAGGAGACCGGAGCCACCATCAAGCTCTCCAAG
TCCAAAGACTTCTACCCCGGAACCACAGAGCGGGTATGCCTAGTACAGGGCACGGCAGAGGCCTTGAATG
CTGTGCACAGCTTTATTGCCGAGAAGGTCCGAGAAATCCCACAAGCGATGACCAAGCCTGAGGTGGTCAA
CATCCTTCAACCCCAAACCACGATGAACCCCGACAGAGCCAAGCAGGCCAAGCTGATCGTCCCCAACAGC
ACGGCGGGCCTGATCATCGGCAAGGGAGGCGCCACGGTGAAAGCCGTGATGGAACAGTCAGGAGCATGGG
TGCAGCTGTCCCAGAAGCCGGAGGGCATCAACCTGCAGGAGCGCGTGGTGACGGTCAGCGGCGAGCCCGA
GCAGGTGCACAAGGCCGTGAGCGCCATCGTGCAGAAGGTACAAGAAGACCCCCAGAGCAGCAGCTGCCTC
AACATCAGCTACGCCAACGTGGCAGGCCCCGTGGCCAACTCCAACCCCACCGGCTCTCCGTACGCCAGCC
CCGCGGATGTGCTGCCAGCCGCGGCCGCAGCGTCGGCCGCCGCCGCCTCCGGCCTGCTGGGCCCCGCCGG
GCTGGCTGGCGTGGGGGCCTTTCCCGCCGCGCTGCCCGCCTTCTCAGGCACCGACCTGCTGGCCATCAGC
ACGGCGCTTAACACGCTGGCAAGTTACGGCTACAACACCAACTCCCTGGGCCTGGGCCTCAACTCGGCCG
CAGCTTCCGGCGTCCTGGCCGCCGTGGCCGCCGGGGCCAACCCAGCAGCCGCCGCCGCCGCCAACCTCCT
GGCATCCTACGCGGGCGAGGCCGGGGCCGGGCCAGCCGGAGGGGCCGCCCCGCCGCCGCCCCCGCCTCCC
GGAGCCCTGGGGTCCTTTGCGTTGGCCGCAGCCGCCAACGGCTACCTCGGGGCCGGGGCGGGCGGCGGGG
CGGGCGGAGGGGGCGGCCCGCTGGTGGCCGCTGCAGCCGCGGCCGGGGCGGCCGGGGGCTTCCTGACGGC
GGAGAAGCTGGCGGCTGAGAGTGCCAAGGAGCTGGTGGAGATTGCGGTGCCTGAGAACCTGGTGGGAGCC
ATCCTGGGGAAGGGGGGCAAGACGTTGGTGGAGTACCAGGAGCTGACGGGCGCTCGCATCCAGATCTCCA
AGAAGGGCGAGTTCCTGCCAGGCACGCGGAACCGGCGGGTCACCATCACGGGCAGCCCCGCGGCCACGCA
AGCCGCTCAATACCTCATCAGTCAGCGGGTCACCTACGAGCAGGGAGTGAGGGCCTCAAACCCCCAGAAA
GTGGGATGA

Translation (492 aa):
MEPEAPDSRKRPLETPPEVVCTKRSNTGEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSK
SKDFYPGTTERVCLVQGTAEALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNS
TAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSGEPEQVHKAVSAIVQKVQEDPQSSSCL
NISYANVAGPVANSNPTGSPYASPADVLPAAAAASAAAASGLLGPAGLAGVGAFPAALPAFSGTDLLAIS
TALNTLASYGYNTNSLGLGLNSAAASGVLAAVAAGANPAAAAAANLLASYAGEAGAGPAGGAAPPPPPPP
GALGSFALAAAANGYLGAGAGGGAGGGGGPLVAAAAAAGAAGGFLTAEKLAAESAKELVEIAVPENLVGA
ILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTYEQGVRASNPQK
VG


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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