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Report for CCDS13049.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13049.1 Public Homo sapiens 20 LZTS3 24 110 108 CCDS HistoryNCBI Gene:9762Re-query CCDS DB by CCDS ID:13049.1Re-query CCDS DB by GeneID:9762See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 13049.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000329152.7 ENSP00000332123.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000329152.7Link to Ensembl Protein Viewer:ENSP00000332123.3Re-query CCDS DB by Nucleotide ID:ENST00000329152Re-query CCDS DB by Protein ID:ENSP00000332123
Original member Current member EBI ENST00000337576.7 ENSP00000338166.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000337576.7Link to Ensembl Protein Viewer:ENSP00000338166.6Re-query CCDS DB by Nucleotide ID:ENST00000337576Re-query CCDS DB by Protein ID:ENSP00000338166
Original member Current member NCBI NM_001365618.1 NP_001352547.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001365618.1Link to Protein Sequence:NP_001352547.1Re-query CCDS DB by Nucleotide ID:NM_001365618Re-query CCDS DB by Protein ID:NP_001352547Link to BLAST:NP_001352547.1
Original member Current member NCBI NM_001388189.1 NP_001375118.1 Accepted alive Link to Nucleotide Sequence:NM_001388189.1Link to Protein Sequence:NP_001375118.1Re-query CCDS DB by Nucleotide ID:NM_001388189Re-query CCDS DB by Protein ID:NP_001375118Link to BLAST:NP_001375118.1
Original member Current member NCBI NM_001388190.1 NP_001375119.1 Accepted alive Link to Nucleotide Sequence:NM_001388190.1Link to Protein Sequence:NP_001375119.1Re-query CCDS DB by Nucleotide ID:NM_001388190Re-query CCDS DB by Protein ID:NP_001375119Link to BLAST:NP_001375119.1
Original member Current member NCBI NM_001388191.1 NP_001375120.1 Accepted alive Link to Nucleotide Sequence:NM_001388191.1Link to Protein Sequence:NP_001375120.1Re-query CCDS DB by Nucleotide ID:NM_001388191Re-query CCDS DB by Protein ID:NP_001375120Link to BLAST:NP_001375120.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001352547.1 673 O60299-1 673 100% 0 0
NP_001375118.1 673 O60299-1 673 100% 0 0
NP_001375119.1 673 O60299-1 673 100% 0 0
NP_001375120.1 673 O60299-1 673 100% 0 0

Chromosomal Locations for CCDS 13049.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 3164454 3165152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3165497 3166360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3166705 3167163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2022 nt):
ATGGCGAAGCTGGAGACGCTGCCTGTGCGCGCTGACCCAGGGCGGGATCCTCTCCTGGCCTTTGCCCCAC
GGCCCTCCGAGCTTGGACCCCCGGACCCCCGCCTGGCCATGGGCAGCGTGGGCAGTGGGGTGGCCCATGC
CCAGGAGTTTGCCATGAAGAGCGTGGGTACCCGCACAGGGGGTGGGGGCAGCCAGGGCAGTTTCCCTGGC
CCCCGAGGCAGTGGCAGTGGGGCCAGCAGGGAGAGGCCGGGCCGCTACCCCTCAGAGGACAAGGGTCTCG
CCAACTCCCTCTACCTCAATGGTGAGCTGCGGGGCAGTGACCACACCGATGTCTGTGGCAACGTGGTTGG
CAGCAGCGGAGGCAGCAGCAGCAGTGGTGGCAGTGACAAAGCCCCACCGCAGTATCGTGAGCCCAGCCAC
CCACCCAAGCTCCTGGCCACCTCTGGCAAGCTAGACCAGTGCTCAGAACCACTAGTTCGGCCGTCGGCCT
TCAAGCCTGTCGTACCCAAGAATTTCCACTCCATGCAGAATTTGTGCCCCCCGCAGACCAATGGGACTCC
TGAGGGACGGCAGGGCCCTGGTGGCCTCAAAGGCGGACTGGACAAGTCTCGGACCATGACTCCAGCGGGT
GGGAGTGGGAGTGGCCTCTCAGACTCAGGCCGGAACTCCCTCACAAGCCTGCCCACCTACAGCTCCAGCT
ACAGCCAGCACCTGGCACCCCTCAGTGCCTCCACCAGCCACATTAACCGCATTGGCACTGCCAGCTATGG
TAGTGGTAGTGGCGGCAGCAGCGGTGGGGGGTCGGGCTACCAGGACCTGGGGACCTCCGATAGTGGACGG
GCCTCCAGCAAGAGTGGGTCGTCGTCATCTATGGGGCGGCCAGGCCACCTGGGCTCTGGGGAGGGCGGAG
GTGGAGGCCTGCCTTTCGCGGCCTGCTCACCGCCCTCCCCCAGTGCACTCATCCAGGAGCTGGAGGAGCG
GCTGTGGGAGAAGGAGCAGGAGGTGGCAGCTCTGCGGCGCAGCCTGGAGCAGAGCGAGGCGGCTGTGGCC
CAGGTACTGGAGGAGCGGCAGAAGGCGTGGGAGCGGGAGCTGGCCGAGCTGCGGCAGGGCTGCAGCGGGA
AGCTACAGCAGGTGGCCCGACGTGCCCAGCGCGCCCAGCAGGGCCTACAGCTGCAGGTGTTGCGGCTGCA
GCAGGACAAGAAGCAGCTGCAGGAGGAGGCGGCCCGGCTGATGCGGCAGCGGGAAGAGCTGGAGGACAAG
GTGGCCGCCTGCCAGAAGGAGCAGGCCGACTTCCTGCCCCGGATAGAGGAAACTAAGTGGGAGGTGTGCC
AGAAGGCTGGCGAGATCTCCCTCCTGAAGCAGCAGCTGAAGGACTCGCAGGCGGATGTGTCGCAGAAGTT
GAGTGAGATCGTGGGACTGCGCTCGCAGCTGCGGGAGGGCCGGGCTTCGCTGCGGGAGAAGGAGGAGCAG
CTGCTCAGCCTGCGGGACTCCTTCAGCAGCAAGCAGGCCAGCCTGGAGCTGGGCGAAGGCGAGCTGCCTG
CCGCCTGCCTCAAGCCGGCGCTGACCCCCGTGGACCCGGCCGAGCCACAGGATGCTCTGGCCACCTGCGA
GAGCGACGAGGCTAAGATGCGCCGTCAGGCCGGGGTGGCCGCTGCCGCCTCCTTGGTTTCCGTGGACGGG
GAGGCGGAGGCTGGCGGGGAGAGCGGGACGCGGGCCCTGCGGCGGGAGGTGGGGCGGCTGCAGGCCGAGC
TGGCGGCTGAGCGGCGGGCCCGGGAGCGCCAGGGTGCCAGCTTCGCCGAGGAGCGCCGCGTGTGGCTGGA
GGAGAAGGAGAAGGTGATCGAGTACCAGAAGCAGCTGCAGCTGAGCTACGTGGAGATGTACCAGCGCAAC
CAGCAGCTGGAGCGCAGGCTGCGGGAGCGCGGGGCCGCAGGGGGTGCAAGCACGCCCACTCCCCAGCATG
GCGAGGAGAAGAAGGCCTGGACCCCCTCCCGCCTCGAGCGCATTGAGTCCACAGAAATCTGA

Translation (673 aa):
MAKLETLPVRADPGRDPLLAFAPRPSELGPPDPRLAMGSVGSGVAHAQEFAMKSVGTRTGGGGSQGSFPG
PRGSGSGASRERPGRYPSEDKGLANSLYLNGELRGSDHTDVCGNVVGSSGGSSSSGGSDKAPPQYREPSH
PPKLLATSGKLDQCSEPLVRPSAFKPVVPKNFHSMQNLCPPQTNGTPEGRQGPGGLKGGLDKSRTMTPAG
GSGSGLSDSGRNSLTSLPTYSSSYSQHLAPLSASTSHINRIGTASYGSGSGGSSGGGSGYQDLGTSDSGR
ASSKSGSSSSMGRPGHLGSGEGGGGGLPFAACSPPSPSALIQELEERLWEKEQEVAALRRSLEQSEAAVA
QVLEERQKAWERELAELRQGCSGKLQQVARRAQRAQQGLQLQVLRLQQDKKQLQEEAARLMRQREELEDK
VAACQKEQADFLPRIEETKWEVCQKAGEISLLKQQLKDSQADVSQKLSEIVGLRSQLREGRASLREKEEQ
LLSLRDSFSSKQASLELGEGELPAACLKPALTPVDPAEPQDALATCESDEAKMRRQAGVAAAASLVSVDG
EAEAGGESGTRALRREVGRLQAELAAERRARERQGASFAEERRVWLEEKEKVIEYQKQLQLSYVEMYQRN
QQLERRLRERGAAGGASTPTPQHGEEKKAWTPSRLERIESTEI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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