NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS13558.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13558.1 Public Homo sapiens 20 MYT1 24 110 108 CCDS HistoryNCBI Gene:4661Re-query CCDS DB by CCDS ID:13558.1Re-query CCDS DB by GeneID:4661See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13558.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000328439.6 ENSP00000327465.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000328439.6Link to Ensembl Protein Viewer:ENSP00000327465.1Re-query CCDS DB by Nucleotide ID:ENST00000328439Re-query CCDS DB by Protein ID:ENSP00000327465
Original member Current member EBI ENST00000650655.1 ENSP00000498616.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000650655.1Link to Ensembl Protein Viewer:ENSP00000498616.1Re-query CCDS DB by Nucleotide ID:ENST00000650655Re-query CCDS DB by Protein ID:ENSP00000498616
Original member Current member NCBI NM_004535.3 NP_004526.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004535.3Link to Protein Sequence:NP_004526.1Re-query CCDS DB by Nucleotide ID:NM_004535Re-query CCDS DB by Protein ID:NP_004526Link to BLAST:NP_004526.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004526.1 1121 Q01538-1 1121 100% 0 0

Chromosomal Locations for CCDS 13558.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 64198862 64198916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 64199892 64199922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 64205035 64205097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 64205553 64205800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 64207594 64208487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 64211206 64211340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 64212048 64212138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 64213534 64213647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 64217067 64217281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 64218911 64219035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 64219713 64219982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 64221893 64222047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 64223111 64223173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 64223291 64223359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 64227415 64227477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 64227888 64227971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 64232164 64232385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 64236555 64236646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 64237287 64237390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 64239760 64239903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 64240320 64240448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3366 nt):
ATGAGCTTAGAAAATGAAGACAAGCGAGCTCGCACCCGATCCAAGGCCCTGCGAGGACCCCCAGAGACCA
CAGCTGCAGACCTCAGCTGCCCCACCCCAGGATGCACAGGCTCAGGGCACGTCCGGGGCAAGTACTCCAG
GCACCGAAGTTTACAGAGCTGCCCCCTGGCCAAGAAGAGGAAGCTGGAGGGCGCTGAGGCTGAGCACCTG
GTGTCCAAGAGGAAGTCACACCCCCTGAAGCTGGCTCTGGACGAGGGCTATGGTGTGGACAGCGACGGCA
GTGAGGACACTGAGGTGAAGGACGCCTCTGTTTCGGATGAATCGGAAGGAACTCTGGAGGGGGCCGAGGC
TGAGACGTCAGGACAGGACGAGATTCATCGCCCCGAGACAGCTGAAGGAAGGAGCCCCGTCAAGTCCCAT
TTTGGATCCAACCCCATCGGCAGCGCCACTGCCTCCTCCAAGGGCAGCTACAGCAGCTACCAGGGAATCA
TCGCAACTTCTCTCCTGAACTTGGGTCAAATTGCTGAAGAGACCCTGGTGGAAGAGGACTTGGGCCAGGC
GGCCAAGCCAGGTCCTGGCATTGTGCACCTGCTTCAGGAGGCTGCAGAGGGAGCTGCCAGCGAGGAGGGT
GAAAAGGGCCTCTTCATCCAGCCAGAGGATGCCGAGGAGGTCGTCGAAGTCACCACCGAGCGCTCCCAGG
ACCTGTGTCCCCAGTCCCTGGAGGATGCAGCCAGTGAGGAGTCCAGCAAGCAGAAAGGCATCCTGAGTCA
CGAAGAGGAGGACGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGATGAAGAAGAGGAAGAGGAA
GAGGAGGAGGAAGAGGAAGAGGAGGAGGAGGAAGAGGAAGAGGAGGAGGAAGAGGAAGAGGAAGAGGAGG
AGGAGGAGGCAGCTCCTGATGTGATCTTTCAGGAAGACACCTCTCACACCTCTGCCCAGAAGGCCCCTGA
GCTCCGGGGCCCAGAATCACCCAGTCCCAAGCCTGAGTACTCTGTTATTGTGGAGGTCCGCTCGGATGAT
GACAAGGACGAGGACACCCACTCCCGGAAGTCAACAGTCACTGACGAGTCGGAGATGCAGGACATGATGA
CCCGGGGAAACCTGGGCCTCCTGGAGCAGGCCATCGCCCTGAAGGCTGAACAGGTGCGCACAGTCTGCGA
GCCGGGCTGCCCGCCTGCCGAGCAGAGCCAGCTGGGCCTGGGAGAGCCAGGGAAGGCAGCAAAGCCCCTG
GACACTGTGCGGAAGAGTTACTACAGTAAAGATCCTTCAAGAGCTGAGAAGCGTGAGATCAAGTGTCCAA
CACCAGGCTGTGATGGCACTGGCCACGTTACCGGGTTGTACCCTCACCACCGCAGCCTTTCTGGCTGTCC
CCACAAGGATAGGATCCCCCCAGAGATCTTAGCCATGCATGAGAACGTGCTGAAGTGCCCCACTCCTGGC
TGCACAGGCCAGGGTCACGTGAACAGCAACCGCAACACGCACAGAAGTTTGTCTGGGTGTCCCATTGCTG
CCGCCGAAAAATTAGCCAAATCCCATGAGAAGCAGCAGCCGCAGACAGGAGATCCTTCCAAGAGTAGCTC
CAATTCCGATCGGATCCTCAGGCCCATGTGCTTCGTGAAGCAGCTCGAGGTCCCTCCATATGGGAGCTAC
CGGCCCAACGTGGCCCCCGCCACACCCAGGGCCAACTTGGCCAAGGAGCTGGAGAAGTTCTCCAAGGTCA
CCTTTGACTACGCAAGTTTCGATGCTCAGGTTTTTGGCAAACGCATGCTTGCCCCAAAGATTCAGACCAG
CGAAACCTCACCTAAAGCCTTTCAATGCTTTGACTACTCGCAGGACGCCGAGGCTGCACACATGGCTGCC
ACTGCCATCCTGAACCTCTCCACGCGCTGCTGGGAGATGCCTGAGAACCTCAGCACGAAGCCACAGGACC
TCCCCAGCAAGTCTGTGGATATCGAGGTAGACGAAAATGGAACCCTGGACTTGAGCATGCACAAACACCG
CAAACGAGAAAATGCTTTCCCCAGCAGCAGCAGCTGCAGCAGCAGCCCCGGTGTGAAGTCTCCCGACGCC
TCCCAGCGCCACAGCAGCACCAGCGCCCCCAGCAGCTCCATGACCTCTCCCCAGTCCAGCCAGGCCTCCC
GCCAGGACGAGTGGGACCGGCCCCTGGACTACACCAAGCCTAGCCGCCTGAGAGAGGAGGAACCTGAGGA
GTCAGAGCCAGCAGCCCATTCTTTTGCTTCTTCTGAAGCAGATGACCAGGAAGTGTCGGAAGAGAATTTT
GAGGAGCGGAAGTATCCGGGGGAAGTCACCCTGACCAACTTTAAGCTGAAGTTTCTCTCCAAGGACATAA
AGAAGGAGCTGCTCACCTGTCCCACCCCTGGCTGTGACGGCAGCGGCCACATCACCGGGAACTACGCCTC
CCACCGCAGCCTCTCTGGTTGCCCTCTTGCTGACAAGAGCCTCAGAAACCTCATGGCTGCCCACTCTGCT
GACCTCAAGTGCCCCACGCCCGGCTGTGACGGCTCTGGCCACATCACAGGGAACTACGCTTCACACCGGA
GCTTGTCCGGCTGCCCTCGTGCAAAGAAAAGTGGAGTCAAGGTGGCACCCACCAAGGACGACAAGGAGGA
CCCCGAGCTGATGAAGTGCCCAGTTCCAGGCTGTGTGGGGCTCGGTCACATCAGCGGGAAATACGCCTCT
CACAGGAGCGCATCCGGCTGCCCACTGGCCGCCCGCAGGCAGAAGGAAGGGTCCCTCAATGGCTCGTCAT
TCTCCTGGAAGTCCCTGAAGAATGAAGGACCGACCTGCCCCACCCCGGGCTGTGACGGCTCTGGCCACGC
CAATGGGAGTTTCCTCACCCACCGGAGTTTGTCAGGCTGTCCCAGAGCAACCTTTGCTGGAAAGAAGGGA
AAACTGTCAGGGGATGAGGTCCTCAGTCCAAAGTTCAAGACTAGCGACGTGTTGGAGAATGATGAGGAGA
TCAAGCAGCTGAACCAGGAGATCCGAGACCTGAACGAGTCCAACTCGGAGATGGAGGCTGCCATGGTGCA
GCTGCAGTCCCAGATCTCCTCCATGGAGAAGAACCTGAAGAACATCGAGGAGGAGAACAAGCTCATTGAG
GAGCAGAATGAAGCCCTGTTTCTGGAGCTGTCCGGCCTGAGCCAGGCCCTCATCCAAAGTCTCGCCAATA
TCCGCCTTCCGCACATGGAGCCAATATGCGAACAGAATTTCGATGCCTATGTGAGCACCCTCACCGACAT
GTACTCCAACCAGGACCCGGAGAACAAGGACCTCCTGGAGAGCATCAAGCAGGCTGTGAGGGGCATCCAG
GTCTAG

Translation (1121 aa):
MSLENEDKRARTRSKALRGPPETTAADLSCPTPGCTGSGHVRGKYSRHRSLQSCPLAKKRKLEGAEAEHL
VSKRKSHPLKLALDEGYGVDSDGSEDTEVKDASVSDESEGTLEGAEAETSGQDEIHRPETAEGRSPVKSH
FGSNPIGSATASSKGSYSSYQGIIATSLLNLGQIAEETLVEEDLGQAAKPGPGIVHLLQEAAEGAASEEG
EKGLFIQPEDAEEVVEVTTERSQDLCPQSLEDAASEESSKQKGILSHEEEDEEEEEEEEEEEEDEEEEEE
EEEEEEEEEEEEEEEEEEEEEEEEEEAAPDVIFQEDTSHTSAQKAPELRGPESPSPKPEYSVIVEVRSDD
DKDEDTHSRKSTVTDESEMQDMMTRGNLGLLEQAIALKAEQVRTVCEPGCPPAEQSQLGLGEPGKAAKPL
DTVRKSYYSKDPSRAEKREIKCPTPGCDGTGHVTGLYPHHRSLSGCPHKDRIPPEILAMHENVLKCPTPG
CTGQGHVNSNRNTHRSLSGCPIAAAEKLAKSHEKQQPQTGDPSKSSSNSDRILRPMCFVKQLEVPPYGSY
RPNVAPATPRANLAKELEKFSKVTFDYASFDAQVFGKRMLAPKIQTSETSPKAFQCFDYSQDAEAAHMAA
TAILNLSTRCWEMPENLSTKPQDLPSKSVDIEVDENGTLDLSMHKHRKRENAFPSSSSCSSSPGVKSPDA
SQRHSSTSAPSSSMTSPQSSQASRQDEWDRPLDYTKPSRLREEEPEESEPAAHSFASSEADDQEVSEENF
EERKYPGEVTLTNFKLKFLSKDIKKELLTCPTPGCDGSGHITGNYASHRSLSGCPLADKSLRNLMAAHSA
DLKCPTPGCDGSGHITGNYASHRSLSGCPRAKKSGVKVAPTKDDKEDPELMKCPVPGCVGLGHISGKYAS
HRSASGCPLAARRQKEGSLNGSSFSWKSLKNEGPTCPTPGCDGSGHANGSFLTHRSLSGCPRATFAGKKG
KLSGDEVLSPKFKTSDVLENDEEIKQLNQEIRDLNESNSEMEAAMVQLQSQISSMEKNLKNIEEENKLIE
EQNEALFLELSGLSQALIQSLANIRLPHMEPICEQNFDAYVSTLTDMYSNQDPENKDLLESIKQAVRGIQ
V


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH