CCDS Report for Consensus CDS

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Report for CCDS1359.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
1359.1	Public	Homo sapiens	1	RGL1	24	110	108

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1359.1

Original	Current	Source	Nucleotide ID	Protein ID	MANE	Status in CCDS	Seq. Status	Links
		EBI	ENST00000304685.8	ENSP00000303192.3		Accepted	alive
		NCBI	NM_015149.6	NP_055964.3		Accepted	alive

RefSeq	Length	Related UniProtKB/SwissProt	Length	Identity	Gaps	Mismatches
NP_055964.3	803	Q9NZL6-2	803	100%	0	0

Chromosomal Locations for CCDS 1359.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)

Genome Browser links:

Chromosome	Start	Stop
1	183742158	183742289
1	183806375	183806485
1	183847566	183847774
1	183865996	183866073
1	183880616	183880800
1	183883786	183883910
1	183884723	183884938
1	183888474	183888577
1	183892077	183892161
1	183897808	183897897
1	183900150	183900236
1	183902568	183902600
1	183904850	183904971
1	183907012	183907101
1	183912082	183912268
1	183916447	183916701
1	183922222	183922336
1	183926105	183926292

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2412 nt):
ATGGAGGTGAAACCTGTGGGAGAACCTACTCAAGAGGTGTCTAAATTCAAACTTTCCACCAAGGTAGAAA GCACGGGACACTGGCTGGTGGAAGATCATGTTCGAATATGGGAAGTTTTAAAGACAGAGGAGAGCTCGAT TCAGGACTGGGGTGAAGAGGTAGAGGAAGGAGCTGTTTACCATGTCACCCTCAAAAGAGTCCAGATTCAA CAGGCTGCCAATAAAGGAGCAAGATGGCTAGGGGTTGAAGGGGACCAGCTGCCTCCAGGACACACAGTCA GTCAATATGAAACCTGTAAGATCAGGACCATAAAAGCTGGCACCTTGGAGAAGCTTGTGGAGAACCTGCT GACAGCTTTTGGGGACAATGACTTTACCTATATCAGCATCTTTCTTTCAACGTACAGAGGCTTTGCCTCC ACTAAAGAAGTGCTGGAACTACTGCTGGACAGGTATGGAAACCTGACAAGCCCAAACTGTGAAGAAGATG GAAGCCAAAGTTCATCAGAGTCCAAAATGGTGATCAGGAATGCAATCGCTTCCATACTAAGGGCCTGGCT TGACCAGTGTGCAGAAGACTTCCGAGAGCCCCCTCACTTCCCTTGCTTACAGAAACTGCTGGATTATCTC ACACGGATGATGCCGGGCTCTGACCCAGAAAGAAGAGCACAAAATCTTCTTGAGCAGTTTCAGAAGCAAG AAGTGGAAACTGACAATGGGCTTCCCAACACGATCTCCTTCAGCCTGGAAGAGGAAGAGGAACTGGAGGG TGGAGAGTCAGCAGAATTCACGTGCTTCTCAGAAGATCTCGTGGCAGAGCAGCTGACCTACATGGATGCA CAACTCTTCAAGAAAGTAGTGCCTCACCACTGCCTGGGCTGCATTTGGTCTCGAAGGGATAAGAAGGAAA ACAAACATTTGGCTCCTACGATCCGTGCCACCATCTCTCAGTTTAATACCCTCACCAAATGTGTTGTCAG CACCATCCTGGGGGGCAAAGAACTCAAAACTCAGCAGAGAGCCAAAATCATTGAGAAGTGGATCAACATC GCTCATGAATGTAGACTCCTGAAGAATTTTTCCTCCTTGAGGGCCATCGTTTCGGCACTGCAGTCTAATT CCATCTATCGGTTAAAAAAGACTTGGGCTGCCGTCCCAAGGGACCGAATGCTGATGTTTGAAGAACTTTC AGATATCTTCTCAGACCATAATAACCATTTGACCAGCCGAGAACTACTGATGAAGGAAGGAACCTCAAAA TTTGCAAACCTGGACAGCAGTGTGAAAGAAAACCAGAAGCGTACCCAGAGGCGGCTGCAGCTCCAGAAGG ACATGGGTGTGATGCAGGGAACTGTGCCCTACCTGGGCACCTTCCTGACTGACCTGACCATGCTTGACAC TGCCCTTCAGGACTACATCGAGGGTGGACTGATAAACTTTGAGAAAAGGAGAAGGGAATTTGAAGTGATT GCCCAGATAAAGCTCTTACAGTCTGCCTGCAACAGCTATTGCATGACCCCAGACCAAAAGTTCATCCAGT GGTTCCAGAGGCAGCAGCTCCTGACAGAGGAGGAGAGCTATGCCCTGTCATGTGAGATTGAAGCAGCTGC TGACGCCAGCACCACCTCGCCCAAGCCTCGGAAGAGCATGGTGAAGAGACTCAGCCTACTGTTTCTAGGG TCTGACATGATCACCAGTCCCACTCCCACCAAAGAGCAGCCCAAGTCCACTGCCAGCGGGAGCTCTGGTG AAAGCATGGACTCTGTCAGCGTGTCATCCTGCGAGTCGAACCACTCAGAGGCTGAGGAGGGCTCCATTAC TCCCATGGACACCCCTGATGAGCCTCAAAAAAAGCTCTCTGAGTCCTCCTCATCCTGTTCTTCTATCCAT TCCATGGACACAAATTCCTCAGGGATGTCTTCCTTAATCAACCCCCTCTCCTCCCCTCCGTCCTGCAACA ACAACCCCAAAATCCACAAGCGCTCTGTCTCGGTGACGTCCATTACCTCGACTGTGCTGCCTCCTGTTTA CAACCAACAGAATGAAGACACCTGCATAATCCGCATCAGTGTGGAAGACAATAACGGCAACATGTACAAG AGCATCATGTTGACGAGCCAGGATAAAACCCCCGCTGTGATCCAGAGAGCCATGCTGAAGCACAATCTGG ACTCAGACCCCGCCGAGGAGTACGAGCTGGTGCAGGTCATCTCGGAGGACAAAGAACTTGTGATTCCAGA CTCAGCAAATGTCTTTTATGCCATGAACAGCCAAGTGAACTTTGACTTCATTTTGCGCAAAAAGAACTCC ATGGAAGAACAAGTGAAACTGCGTAGCCGGACCAGCTTGACGTTGCCCAGGACAGCTAAACGGGGCTGCT GGAGTAACAGACACAGCAAAATCACCCTCTGA
Translation (803 aa):
MEVKPVGEPTQEVSKFKLSTKVESTGHWLVEDHVRIWEVLKTEESSIQDWGEEVEEGAVYHVTLKRVQIQ QAANKGARWLGVEGDQLPPGHTVSQYETCKIRTIKAGTLEKLVENLLTAFGDNDFTYISIFLSTYRGFAS TKEVLELLLDRYGNLTSPNCEEDGSQSSSESKMVIRNAIASILRAWLDQCAEDFREPPHFPCLQKLLDYL TRMMPGSDPERRAQNLLEQFQKQEVETDNGLPNTISFSLEEEEELEGGESAEFTCFSEDLVAEQLTYMDA QLFKKVVPHHCLGCIWSRRDKKENKHLAPTIRATISQFNTLTKCVVSTILGGKELKTQQRAKIIEKWINI AHECRLLKNFSSLRAIVSALQSNSIYRLKKTWAAVPRDRMLMFEELSDIFSDHNNHLTSRELLMKEGTSK FANLDSSVKENQKRTQRRLQLQKDMGVMQGTVPYLGTFLTDLTMLDTALQDYIEGGLINFEKRRREFEVI AQIKLLQSACNSYCMTPDQKFIQWFQRQQLLTEEESYALSCEIEAAADASTTSPKPRKSMVKRLSLLFLG SDMITSPTPTKEQPKSTASGSSGESMDSVSVSSCESNHSEAEEGSITPMDTPDEPQKKLSESSSSCSSIH SMDTNSSGMSSLINPLSSPPSCNNNPKIHKRSVSVTSITSTVLPPVYNQQNEDTCIIRISVEDNNGNMYK SIMLTSQDKTPAVIQRAMLKHNLDSDPAEEYELVQVISEDKELVIPDSANVFYAMNSQVNFDFILRKKNS MEEQVKLRSRTSLTLPRTAKRGCWSNRHSKITL

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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