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Report for CCDS13923.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13923.1 Public Homo sapiens 22 APOL3 24 110 108 CCDS HistoryNCBI Gene:80833Re-query CCDS DB by CCDS ID:13923.1Re-query CCDS DB by GeneID:80833See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 13923.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000424878.4 ENSP00000415779.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000424878.4Link to Ensembl Protein Viewer:ENSP00000415779.3Re-query CCDS DB by Nucleotide ID:ENST00000424878Re-query CCDS DB by Protein ID:ENSP00000415779
Original member Current member NCBI NM_001393593.1 NP_001380522.1 Accepted alive Link to Nucleotide Sequence:NM_001393593.1Link to Protein Sequence:NP_001380522.1Re-query CCDS DB by Nucleotide ID:NM_001393593Re-query CCDS DB by Protein ID:NP_001380522Link to BLAST:NP_001380522.1
Original member Current member NCBI NM_001393595.1 NP_001380524.1 Accepted alive Link to Nucleotide Sequence:NM_001393595.1Link to Protein Sequence:NP_001380524.1Re-query CCDS DB by Nucleotide ID:NM_001393595Re-query CCDS DB by Protein ID:NP_001380524Link to BLAST:NP_001380524.1
Original member Current member NCBI NM_001393596.1 NP_001380525.1 Accepted alive Link to Nucleotide Sequence:NM_001393596.1Link to Protein Sequence:NP_001380525.1Re-query CCDS DB by Nucleotide ID:NM_001393596Re-query CCDS DB by Protein ID:NP_001380525Link to BLAST:NP_001380525.1
Original member Current member NCBI NM_001393597.1 NP_001380526.1 Accepted alive Link to Nucleotide Sequence:NM_001393597.1Link to Protein Sequence:NP_001380526.1Re-query CCDS DB by Nucleotide ID:NM_001393597Re-query CCDS DB by Protein ID:NP_001380526Link to BLAST:NP_001380526.1
Original member Current member NCBI NM_001393598.1 NP_001380527.1 Accepted alive Link to Nucleotide Sequence:NM_001393598.1Link to Protein Sequence:NP_001380527.1Re-query CCDS DB by Nucleotide ID:NM_001393598Re-query CCDS DB by Protein ID:NP_001380527Link to BLAST:NP_001380527.1
Original member Current member NCBI NM_001393599.1 NP_001380528.1 Accepted alive Link to Nucleotide Sequence:NM_001393599.1Link to Protein Sequence:NP_001380528.1Re-query CCDS DB by Nucleotide ID:NM_001393599Re-query CCDS DB by Protein ID:NP_001380528Link to BLAST:NP_001380528.1
Original member Current member NCBI NM_001393600.1 NP_001380529.1 Accepted alive Link to Nucleotide Sequence:NM_001393600.1Link to Protein Sequence:NP_001380529.1Re-query CCDS DB by Nucleotide ID:NM_001393600Re-query CCDS DB by Protein ID:NP_001380529Link to BLAST:NP_001380529.1
Original member Current member NCBI NM_001393601.1 NP_001380530.1 Accepted alive Link to Nucleotide Sequence:NM_001393601.1Link to Protein Sequence:NP_001380530.1Re-query CCDS DB by Nucleotide ID:NM_001393601Re-query CCDS DB by Protein ID:NP_001380530Link to BLAST:NP_001380530.1
Original member Current member NCBI NM_001393602.1 NP_001380531.1 Accepted alive Link to Nucleotide Sequence:NM_001393602.1Link to Protein Sequence:NP_001380531.1Re-query CCDS DB by Nucleotide ID:NM_001393602Re-query CCDS DB by Protein ID:NP_001380531Link to BLAST:NP_001380531.1
Original member Current member NCBI NM_001393603.1 NP_001380532.1 Accepted alive Link to Nucleotide Sequence:NM_001393603.1Link to Protein Sequence:NP_001380532.1Re-query CCDS DB by Nucleotide ID:NM_001393603Re-query CCDS DB by Protein ID:NP_001380532Link to BLAST:NP_001380532.1
Original member Current member NCBI NM_001393604.1 NP_001380533.1 Accepted alive Link to Nucleotide Sequence:NM_001393604.1Link to Protein Sequence:NP_001380533.1Re-query CCDS DB by Nucleotide ID:NM_001393604Re-query CCDS DB by Protein ID:NP_001380533Link to BLAST:NP_001380533.1
Original member Current member NCBI NM_014349.3 NP_055164.1 Accepted alive Link to Nucleotide Sequence:NM_014349.3Link to Protein Sequence:NP_055164.1Re-query CCDS DB by Nucleotide ID:NM_014349Re-query CCDS DB by Protein ID:NP_055164Link to BLAST:NP_055164.1
Original member Current member NCBI NM_030644.2 NP_085147.1 Accepted alive Link to Nucleotide Sequence:NM_030644.2Link to Protein Sequence:NP_085147.1Re-query CCDS DB by Nucleotide ID:NM_030644Re-query CCDS DB by Protein ID:NP_085147Link to BLAST:NP_085147.1
Original member Current member NCBI NM_145639.2 NP_663614.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_145639.2Link to Protein Sequence:NP_663614.1Re-query CCDS DB by Nucleotide ID:NM_145639Re-query CCDS DB by Protein ID:NP_663614Link to BLAST:NP_663614.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001380522.1 331 O95236-2 331 100% 0 0
NP_001380524.1 331 O95236-2 331 100% 0 0
NP_001380525.1 331 O95236-2 331 100% 0 0
NP_001380526.1 331 O95236-2 331 100% 0 0
NP_001380527.1 331 O95236-2 331 100% 0 0
NP_001380528.1 331 O95236-2 331 100% 0 0
NP_001380529.1 331 O95236-2 331 100% 0 0
NP_001380530.1 331 O95236-2 331 100% 0 0
NP_001380531.1 331 O95236-2 331 100% 0 0
NP_001380532.1 331 O95236-2 331 100% 0 0
NP_001380533.1 331 O95236-2 331 100% 0 0
NP_055164.1 331 O95236-2 331 100% 0 0
NP_085147.1 331 O95236-2 331 100% 0 0
NP_663614.1 331 O95236-2 331 100% 0 0

Chromosomal Locations for CCDS 13923.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 36141200 36142058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 36145473 36145599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 36149046 36149055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (996 nt):
ATGGACTCAGAAAAGAAACGCTTTACTGAAGAGGCCACCAAATACTTCCGGGAGAGAGTCAGCCCAGTGC
ATCTGCAAATCCTGCTGACTAACAATGAAGCCTGGAAGAGATTCGTGACTGCGGCTGAATTGCCCAGGGA
TGAGGCAGATGCTCTCTACGAAGCTCTGAAGAAGCTTAGAACATATGCAGCTATTGAGGACGAATATGTG
CAGCAGAAAGATGAGCAGTTTAGGGAATGGTTTTTGAAAGAGTTTCCCCAAGTCAAGAGGAAGATCCAGG
AGTCCATAGAAAAGCTTCGTGCCCTTGCAAATGGTATTGAAGAGGTCCACAGAGGCTGCACCATCTCCAA
TGTGGTGTCCAGCTCCACTGGCGCTGCCTCTGGCATCATGTCCCTTGCTGGTCTTGTTTTGGCACCATTT
ACAGCAGGGACGAGTCTGGCCCTTACTGCAGCTGGGGTAGGGCTGGGAGCAGCGTCTGCTGTGACTGGGA
TCACCACCAGCATCGTGGAGCACTCATACACATCATCAGCAGAAGCTGAAGCCAGCAGGCTGACTGCAAC
CAGCATTGACCGATTGAAGGTATTTAAGGAAGTTATGCGTGACATCACACCCAACTTACTTTCCCTTCTT
AATAATTATTACGAAGCCACACAAACCATTGGGAGTGAAATCCGTGCCATCAGGCAAGCCAGAGCCAGGG
CCCGACTCCCTGTGACCACCTGGCGAATCTCAGCTGGAAGTGGTGGTCAAGCAGAGAGAACGATTGCAGG
CACCACCCGGGCAGTGAGCAGAGGAGCCCGGATCCTGAGTGCGACCACTTCAGGCATCTTCCTTGCACTG
GATGTGGTCAACCTTGTATACGAGTCAAAGCACTTGCATGAGGGGGCAAAGTCTGCATCTGCTGAGGAGC
TGAGGCGGCAGGCTCAGGAGCTGGAGGAGAATCTAATGGAGCTCACTCAGATCTATCAGCGTCTGAATCC
ATGCCATACCCACTGA

Translation (331 aa):
MDSEKKRFTEEATKYFRERVSPVHLQILLTNNEAWKRFVTAAELPRDEADALYEALKKLRTYAAIEDEYV
QQKDEQFREWFLKEFPQVKRKIQESIEKLRALANGIEEVHRGCTISNVVSSSTGAASGIMSLAGLVLAPF
TAGTSLALTAAGVGLGAASAVTGITTSIVEHSYTSSAEAEASRLTATSIDRLKVFKEVMRDITPNLLSLL
NNYYEATQTIGSEIRAIRQARARARLPVTTWRISAGSGGQAERTIAGTTRAVSRGARILSATTSGIFLAL
DVVNLVYESKHLHEGAKSASAEELRRQAQELEENLMELTQIYQRLNPCHTH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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