NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS13959.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13959.1 Public Homo sapiens 22 ANKRD54 24 110 108 CCDS HistoryNCBI Gene:129138Re-query CCDS DB by CCDS ID:13959.1Re-query CCDS DB by GeneID:129138See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13959.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000215941.9 ENSP00000215941.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000215941.9Link to Ensembl Protein Viewer:ENSP00000215941.4Re-query CCDS DB by Nucleotide ID:ENST00000215941Re-query CCDS DB by Protein ID:ENSP00000215941
Original member Current member NCBI NM_138797.4 NP_620152.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_138797.4Link to Protein Sequence:NP_620152.1Re-query CCDS DB by Nucleotide ID:NM_138797Re-query CCDS DB by Protein ID:NP_620152Link to BLAST:NP_620152.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_620152.1 300 Q6NXT1-1 300 100% 0 0

Chromosomal Locations for CCDS 13959.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 37831943 37832017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37832637 37832744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37832958 37833082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37833159 37833206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37833684 37833755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37838500 37838598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37840187 37840234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37843911 37844238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (903 nt):
ATGGCAGCCGCCGCCGGGGACGCGGACGACGAGCCGCGCTCAGGCCACTCGAGCTCGGAGGGCGAGTGCG
CGGTGGCGCCGGAGCCGCTGACTGACGCTGAGGGCCTCTTCTCCTTCGCTGACTTCGGGTCTGCGCTGGG
CGGCGGCGGCGCGGGCCTCTCGGGCCGGGCGTCCGGCGGGGCCCAGTCGCCGCTGCGCTACTTGCACGTC
CTGTGGCAGCAGGATGCGGAGCCGCGCGACGAGCTGCGCTGCAAGATACCCGCTGGCCGGCTGAGGCGCG
CTGCCAGGCCCCACCGGCGGCTCGGGCCCACGGGCAAGGAGGTGCACGCTCTGAAGAGACTGAGGGACTC
GGCCAATGCCAATGATGTGGAAACAGTGCAGCAGCTGCTGGAAGATGGCGCGGATCCCTGTGCAGCTGAT
GACAAGGGCCGCACAGCTCTACACTTTGCCTCATGCAATGGCAATGACCAGATTGTGCAGCTGCTCCTGG
ACCATGGTGCTGATCCTAACCAGCGAGATGGGCTGGGGAACACGCCACTGCACCTGGCGGCCTGCACCAA
CCACGTTCCTGTCATCACCACACTGCTACGAGGAGGGGCCCGTGTAGATGCCCTGGACCGAGCTGGTCGC
ACACCCCTGCACCTGGCCAAGTCAAAGCTGAATATCCTGCAGGAGGGCCATGCCCAGTGCCTAGAGGCTG
TGCGTCTGGAGGTGAAGCAGATCATCCATATGCTGAGGGAGTATCTGGAGCGCCTAGGGCAACATGAGCA
GCGAGAACGCCTGGATGACCTCTGCACCCGCCTGCAGATGACCAGTACCAAAGAGCAGGTGGATGAAGTG
ACTGACCTCCTGGCCAGCTTCACCTCCCTCAGTCTGCAGATGCAGAGCATGGAGAAGAGGTAG

Translation (300 aa):
MAAAAGDADDEPRSGHSSSEGECAVAPEPLTDAEGLFSFADFGSALGGGGAGLSGRASGGAQSPLRYLHV
LWQQDAEPRDELRCKIPAGRLRRAARPHRRLGPTGKEVHALKRLRDSANANDVETVQQLLEDGADPCAAD
DKGRTALHFASCNGNDQIVQLLLDHGADPNQRDGLGNTPLHLAACTNHVPVITTLLRGGARVDALDRAGR
TPLHLAKSKLNILQEGHAQCLEAVRLEVKQIIHMLREYLERLGQHEQRERLDDLCTRLQMTSTKEQVDEV
TDLLASFTSLSLQMQSMEKR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH