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Report for CCDS13991.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13991.1 Public Homo sapiens 22 SYNGR1 24 110 108 CCDS HistoryNCBI Gene:9145Re-query CCDS DB by CCDS ID:13991.1Re-query CCDS DB by GeneID:9145See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13991.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000381535.4 ENSP00000370946.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000381535.4Link to Ensembl Protein Viewer:ENSP00000370946.4Re-query CCDS DB by Nucleotide ID:ENST00000381535Re-query CCDS DB by Protein ID:ENSP00000370946
Original member Current member NCBI NM_145738.3 NP_663791.1 Accepted alive Link to Nucleotide Sequence:NM_145738.3Link to Protein Sequence:NP_663791.1Re-query CCDS DB by Nucleotide ID:NM_145738Re-query CCDS DB by Protein ID:NP_663791Link to BLAST:NP_663791.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663791.1 192 O43759-3 192 100% 0 0

Chromosomal Locations for CCDS 13991.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 39364195 39364296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 39374316 39374553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 39376052 39376197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 39377598 39377690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (579 nt):
ATGTTGACCTTAGAGTTTGGGATTCTGGAATTCGATCCTTCATGGATAGGCAGCTGGACACAGAGGTCGT
GGGTGAGCTGGAGGAGCAGGCCCGGATGTGAGCTGTTCTCCATAGTGGTGTTCGGCTCCATCGTGAACGA
GGGCTACCTCAACAGCGCCTCCGAGGGGGAGGAGTTCTGCATCTACAACCGCAACCCCAACGCCTGCAGC
TATGGCGTGGCCGTGGGCGTGCTCGCCTTCCTCACCTGCCTGCTGTACCTGGCCCTGGACGTGTACTTCC
CGCAGATCAGCAGCGTCAAGGACCGCAAGAAAGCCGTCCTGTCCGACATCGGTGTCTCGGCCTTCTGGGC
TTTCCTCTGGTTCGTGGGATTCTGCTACCTGGCCAACCAGTGGCAGGTCTCCAAGCCCAAGGACAACCCA
CTGAACGAAGGGACGGACGCAGCCCGGGCCGCCATCGCCTTCTCCTTTTTCTCCATCTTCACCTGGAGCC
TGACCGCAGCCCTGGCCGTGCGGAGATTCAAGGACCTAAGCTTCCAGGAGGAGTACAGCACACTGTTCCC
TGCCTCGGCACAGCCGTAG

Translation (192 aa):
MLTLEFGILEFDPSWIGSWTQRSWVSWRSRPGCELFSIVVFGSIVNEGYLNSASEGEEFCIYNRNPNACS
YGVAVGVLAFLTCLLYLALDVYFPQISSVKDRKKAVLSDIGVSAFWAFLWFVGFCYLANQWQVSKPKDNP
LNEGTDAARAAIAFSFFSIFTWSLTAALAVRRFKDLSFQEEYSTLFPASAQP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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