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Report for CCDS14351.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14351.1 Public Homo sapiens X KDM5C 24 110 108 CCDS HistoryNCBI Gene:8242Re-query CCDS DB by CCDS ID:14351.1Re-query CCDS DB by GeneID:8242See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14351.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000375401.8 ENSP00000364550.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000375401.8Link to Ensembl Protein Viewer:ENSP00000364550.4Re-query CCDS DB by Nucleotide ID:ENST00000375401Re-query CCDS DB by Protein ID:ENSP00000364550
Original member Current member NCBI NM_004187.5 NP_004178.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004187.5Link to Protein Sequence:NP_004178.2Re-query CCDS DB by Nucleotide ID:NM_004187Re-query CCDS DB by Protein ID:NP_004178Link to BLAST:NP_004178.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004178.2 1560 P41229-1 1560 100% 0 0

Chromosomal Locations for CCDS 14351.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 53192967 53193332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53193437 53193636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53193773 53193851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53194139 53194738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53194931 53195068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53195231 53195410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53195916 53196054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53196686 53197044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53197771 53197876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53198490 53198637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53198764 53198888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53198977 53199158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53201550 53201744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53201854 53201973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53210414 53210576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53210676 53210857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53211497 53211655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53211787 53211906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53214689 53214847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53215795 53215976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53216074 53216197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53217143 53217277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53217796 53217966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53218276 53218398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53220839 53220916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53224740 53224889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4683 nt):
ATGGAGCCGGGGTCCGACGATTTCCTACCGCCACCGGAGTGCCCGGTGTTCGAGCCTAGCTGGGCCGAGT
TC
CGAGACCCTCTTGGCTACATCGCGAAAATCAGGCCCATCGCAGAGAAATCGGGCATTTGCAAGATCCG
C
CCACCCGCGGACTGGCAGCCACCCTTTGCTGTGGAAGTGGACAACTTCAGGTTTACCCCCCGAATCCAG
AGG
CTGAATGAGCTAGAGGCCCAGACGAGAGTGAAACTGAACTACTTGGACCAGATTGCCAAATTCTGGG
AA
ATCCAGGGCTCCTCCTTAAAGATTCCCAATGTAGAACGGCGGATCTTGGACCTCTACAGTCTCAGCAA
A
ATTGTGGTGGAGGAAGGTGGTTATGAAGCTATCTGCAAGGACCGTCGGTGGGCTCGGGTAGCCCAGCGC
CTC
AACTATCCACCAGGCAAAAATATTGGCTCCTTGCTACGCTCCCACTACGAACGCATTGTTTATCCCT
AT
GAAATGTACCAGTCTGGAGCCAACCTTGTGCAGTGTAACACACGTCCATTTGATAATGAGGAGAAGGA
C
AAGGAATACAAACCCCACAGCATCCCCCTACGACAGTCTGTGCAGCCTTCCAAGTTCAACAGCTATGGC
CGG
CGGGCCAAGAGACTGCAGCCTGATCCGGAACCCACAGAGGAAGACATTGAGAAGAATCCAGAGCTGA
AA
AAGCTACAGATCTATGGGGCAGGCCCCAAGATGATGGGCCTGGGCCTCATGGCCAAAGACAAGACTCT
G
CGGAAGAAAGATAAGGAGGGGCCTGAGTGTCCCCCCACAGTAGTGGTGAAGGAGGAGTTAGGTGGGGAT
GTG
AAGGTGGAGTCAACATCGCCTAAGACCTTCCTGGAGAGCAAGGAGGAGCTGAGTCACAGCCCAGAAC
CC
TGCACCAAGATGACCATGAGGCTACGGAGGAACCACAGCAATGCCCAGTTTATTGAGTCATATGTCTG
C
CGGATGTGTTCTCGAGGGGATGAGGATGACAAGCTCCTGCTGTGTGATGGCTGTGATGACAACTACCAC
ATC
TTCTGCCTGCTGCCTCCTCTGCCTGAGATCCCCAAGGGTGTCTGGCGGTGCCCAAAGTGTGTCATGG
CG
GAGTGTAAGCGGCCCCCAGAAGCCTTTGGCTTTGAGCAGGCTACCCGGGAATACACTCTGCAGAGCTT
T
GGCGAGATGGCCGACTCCTTTAAAGCTGACTACTTCAACATGCCCGTGCATATGGTGCCCACAGAACTT
GTG
GAGAAGGAGTTCTGGAGGCTGGTAAATAGCATTGAGGAAGATGTGACTGTTGAGTATGGAGCTGACA
TC
CATTCCAAAGAATTTGGCAGCGGTTTCCCTGTCAGTGACAGTAAACGGCACCTAACCCCCGAAGAGGA
G
GAGTATGCTACCAGTGGTTGGAACCTAAATGTGATGCCGGTGTTGGAACAGTCTGTACTGTGCCACATC
AAT
GCAGATATCTCTGGCATGAAGGTGCCCTGGCTCTACGTGGGCATGGTCTTCTCAGCCTTTTGCTGGC
AT
ATTGAGGATCACTGGAGTTACTCCATTAACTACCTCCACTGGGGTGAGCCGAAGACCTGGTATGGGGT
G
CCCTCACTTGCAGCAGAACATTTGGAAGAAGTGATGAAGAAGCTGACACCTGAACTATTTGATAGCCAG
CCT
GACCTCCTGCACCAACTTGTCACCCTCATGAATCCCAACACCCTCATGTCCCATGGTGTGCCAGTTG
TC
CGCACAAACCAGTGTGCAGGAGAGTTTGTCATCACCTTCCCCCGTGCTTACCACAGCGGCTTCAACCA
A
GGCTACAACTTTGCCGAGGCTGTCAACTTTTGCACTGCTGACTGGTTGCCTGCTGGGCGCCAGTGCATT
GAG
CACTACCGCCGGCTCCGGAGATACTGCGTCTTCTCCCATGAGGAGCTTATCTGCAAGATGGCTGCCT
GC
CCAGAGAAGCTAGACCTGAACCTGGCGGCAGCTGTGCATAAGGAGATGTTCATCATGGTGCAAGAAGA
G
CGGCGTCTACGAAAGGCCCTGCTGGAGAAGGGTATCACAGAGGCTGAGCGAGAGGCTTTCGAGCTGCTC
CCA
GATGATGAGCGCCAGTGTATCAAGTGCAAGACTACGTGTTTCCTGTCAGCCCTGGCCTGCTACGACT
GC
CCAGACGGCCTTGTCTGCCTTTCCCACATCAATGATCTCTGCAAGTGCTCCAGTAGCCGGCAGTACCT
G
CGGTATCGGTATACCTTGGATGAGCTTCCTGCCATGCTGCATAAGCTGAAGGTTCGGGCTGAGTCCTTT
GAC
ACCTGGGCCAACAAAGTGCGAGTGGCCCTGGAGGTGGAGGATGGGCGGAAGCGCAGCCTTGAAGAAC
TG
AGGGCACTAGAGTCTGAAGCCCGTGAGCGGAGGTTTCCTAATAGTGAGCTGCTGCAGCAACTAAAGAA
C
TGCCTGAGTGAGGCAGAGGCTTGCGTGTCCCGAGCTCTGGGACTGGTCAGCGGCCAGGAAGCTGGCCCC
CAC
AGGGTGGCTGGTCTACAGATGACCCTGACTGAGCTCCGGGCCTTTCTGGACCAGATGAACAACCTGC
CT
TGCGCCATGCACCAGATTGGGGATGTCAAGGGTGTTCTGGAACAGGTGGAGGCCTACCAGGCTGAGGC
T
CGTGAGGCCCTGGCCTCACTGCCCTCCAGTCCAGGGCTACTGCAGTCCCTGTTGGAGAGGGGGCGGCAG
CTG
GGGGTGGAGGTGCCTGAGGCCCAGCAGCTCCAGCGGCAGGTGGAACAGGCGCGATGGCTGGATGAGG
TG
AAACGCACACTGGCCCCCTCAGCCCGAAGGGGCACCTTGGCTGTCATGCGAGGACTGTTGGTCGCGGG
T
GCCAGTGTAGCCCCTAGCCCTGCTGTGGATAAAGCCCAGGCCGAGCTGCAGGAACTGCTGACCATTGCT
GAA
CGCTGGGAGGAGAAAGCCCACCTCTGCCTGGAGGCCAGGCAGAAGCATCCACCAGCCACACTTGAGG
CC
ATAATCCGTGAAGCGGAAAACATCCCTGTTCACCTGCCCAACATCCAGGCTCTCAAGGAGGCTCTTGC
T
AAGGCCCGGGCCTGGATTGCTGATGTTGATGAGATCCAAAATGGTGACCACTACCCCTGCCTGGATGAC
TTG
GAGGGCCTAGTAGCTGTGGGCCGGGACCTACCTGTGGGGCTGGAGGAGCTGAGACAGCTAGAGCTAC
AG
GTACTGACAGCGCACTCCTGGAGGGAGAAGGCCTCCAAGACCTTCCTCAAGAAAAATTCTTGCTACAC
G
CTGCTGGAGGTTCTCTGCCCATGTGCAGATGCCGGCTCAGACAGCACCAAGCGCAGCCGGTGGATGGAG
AAG
GAGCTGGGGTTGTACAAATCTGACACAGAGCTGCTGGGGCTGTCTGCGCAGGACCTCAGGGACCCAG
GC
TCTGTGATCGTGGCCTTCAAGGAGGGGGAACAGAAGGAGAAGGAGGGTATCCTGCAGCTGCGTCGCAC
C
AATTCGGCCAAGCCCAGTCCACTGGCATCATCGAGCACGGCCTCCTCTACAACCTCTATCTGTGTGTGT
GGG
CAGGTGCTGGCTGGGGCGGGAGCTCTGCAGTGTGACCTGTGTCAGGACTGGTTCCATGGGCGGTGTG
TG
TCAGTGCCTCGCCTCCTCAGCTCTCCGAGGCCCAATCCCACCTCATCCCCACTGCTGGCCTGGTGGGA
A
TGGGACACCAAATTCCTGTGTCCACTGTGTATGCGCTCAAGGCGCCCGCGCCTGGAGACCATCCTGGCA
CTG
CTGGTAGCCCTGCAGAGACTGCCTGTGCGGCTGCCCGAGGGCGAGGCCCTGCAGTGCCTCACAGAGA
GG
GCCATCAGCTGGCAAGGCCGCGCCAGGCAGGCTCTGGCCTCTGAAGATGTGACTGCTCTTTTGGGACG
G
CTGGCTGAGCTCCGCCAACGGCTACAGGCTGAACCTAGACCTGAGGAGCCTCCTAACTACCCTGCAGCC
CCT
GCTTCTGACCCCCTCAGAGAGGGCAGTGGCAAGGATATGCCTAAGGTCCAGGGCTTACTGGAGAATG
GA
GACAGTGTGACCAGTCCTGAGAAGGTAGCCCCGGAGGAGGGCTCAGGTAAGAGAGATCTGGAGCTGCT
G
TCCTCGCTGTTGCCACAGTTGACTGGCCCTGTGTTGGAACTGCCTGAGGCAACCCGGGCCCCCTTGGAG
GAG
CTCATGATGGAGGGGGACCTGCTCGAGGTGACCCTGGATGAGAACCACAGCATATGGCAGCTGCTGC
AG
GCTGGACAGCCCCCAGACCTGGAGAGGATCCGCACACTTCTGGAGCTGGAGAAGGCAGAGCGTCACGG
G
AGTCGGGCTCGGGGCCGGGCCCTGGAGAGGCGGCGGCGGCGGAAGGTGGATCGGGGTGGGGAGGGCGAT
GAC
CCAGCCCGAGAGGAGCTAGAGCCAAAGAGGGTACGGAGCTCAGGGCCAGAGGCTGAGGAGGTCCAGG
AG
GAGGAAGAGCTGGAGGAGGAGACTGGGGGTGAGGGCCCCCCTGCACCCATCCCCACCACTGGCAGCCC
C
AGCACCCAGGAGAACCAGAATGGCTTGGAACCGGCGGAAGGGACCACTTCAGGCCCCTCGGCCCCTTTC
TCC
ACTCTGACTCCCCGGCTGCATCTGCCCTGCCCACAGCAGCCGCCTCAGCAACAGTTGTGA


Translation (1560 aa):
MEPGSDDFLPPPECPVFEPSWAEFRDPLGYIAKIRPIAEKSGICKIRPPADWQPPFAVEVDNFRFTPRIQ
R
LNELE
AQTRVKLNYLDQIAKFWEIQGSSLKIPNVERRILDLYSLSKIVVEEGGYEAICKDRRWARVAQR
L
NYPPGKNIGSLLRSHYERIVYPYEMYQSGANLV
QCNTRPFDNEEKDKEYKPHSIPLRQSVQPSKFNSYG
R
RAKRLQPD
PEPTEEDIEKNPELKKLQIYGAGPKMMGLGLMAKDKTLRKKDKEGPECPPTVVVKEELGGD
V
KVESTSPKTFLESKEELSHSPEPCTKMTMRLRRNHSNAQF
IESYVCRMCSRGDEDDKLLLCDGCDDNYH
I
FCLLPPLPEIPKGVWRCPKCVMA
ECKRPPEAFGFEQATREYTLQSFGEMADSFKADYFNMPVHMVPTEL
V
EKEFWRLVNSIEEDVTVEYGADIHSKEFGSGFPVSDSKRHLTPEEE
EYATSGWNLNVMPVLEQSVLCHI
N
ADISGMKVPWLYVGMVFSAFCWHIEDHWSYSINYLH
WGEPKTWYGVPSLAAEHLEEVMKKLTPELFDSQ
P
DLLHQLVTLMNPNTLMSHGVP
VVRTNQCAGEFVITFPRAYHSGFNQGYNFAEAVNFCTADWLPAGRQCI
E
HYRRLRRYCVFSHEELICKMAACPEKLDLNLAAAVHKEMFIMVQEERRLRKALLEK
GITEAEREAFELL
P
DDERQCIKCKTTCFLSALACYDCPDGLVCLSHINDLCKCSSSRQYL
RYRYTLDELPAMLHKLKVRAESF
D
TWANKVRVALEVEDGRKR
SLEELRALESEARERRFPNSELLQQLKNCLSEAEACVSRALGLVSGQEAGP
H
RVAGLQMTLTELRAFLDQMNNLPCAMHQIGDVK
GVLEQVEAYQAEAREALASLPSSPGLLQSLLERGRQ
L
GVEVPEAQQLQRQVEQARWLDEVKRTLAPSARRGTLAVMRGLLVAGASVAPSPAVDKAQAELQELLTIA
E
RWEEKAHLCLEA
RQKHPPATLEAIIREAENIPVHLPNIQALKEALAKARAWIADVDEIQNGDHYPCLDD
L
EGLVAVGRDLPVGLEELRQLELQVLTAHSWREKASKTFLKKNSCYTLLE
VLCPCADAGSDSTKRSRWME
K
ELGLYKSDTELLGLSAQDLRDPGSV
IVAFKEGEQKEKEGILQLRRTNSAKPSPLASSSTASSTTSICVC
G
QVLAGAGALQCDLCQDWFHGRCVSVPRLLSSPRPNPTSSPLLAWWEWDTKFLCPLCMRSRRPRLETILA
L
LVALQRLPVRLPEGEALQCLTERAISWQGRARQALASEDVTALLGRLAELRQRLQAEPRPEEPPNYPAA
P
ASDPLREGSGKDMPK
VQGLLENGDSVTSPEKVAPEEGSGKRDLELLSSLLPQLTGPVLELPEATRAPLE
E
LMMEGDLLEVTLDENHSIWQLLQAGQPPDLERIRTLLE
LEKAERHGSRARGRALERRRRRKVDRGGEGD
D
PAREELEPKRVRSSGPEAEEVQEEEELEEETGGEGPPAPIPTTGSPSTQENQNGLEPAEGTTSGPSAPF
S
TLTPRLHLPCPQQPPQQQL




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser