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Report for CCDS1444.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1444.1 Public Homo sapiens 1 PLEKHA6 24 110 108 CCDS HistoryNCBI Gene:22874Re-query CCDS DB by CCDS ID:1444.1Re-query CCDS DB by GeneID:22874See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1444.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000272203.8 ENSP00000272203.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000272203.8Link to Ensembl Protein Viewer:ENSP00000272203.2Re-query CCDS DB by Nucleotide ID:ENST00000272203Re-query CCDS DB by Protein ID:ENSP00000272203
Original member Current member NCBI NM_014935.5 NP_055750.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014935.5Link to Protein Sequence:NP_055750.2Re-query CCDS DB by Nucleotide ID:NM_014935Re-query CCDS DB by Protein ID:NP_055750Link to BLAST:NP_055750.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055750.2 1048 Q9Y2H5 1048 100% 0 0

Chromosomal Locations for CCDS 1444.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 204223470 204223585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 204228083 204228228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 204228728 204228861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 204228937 204229104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 204230413 204230586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 204241375 204241481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 204241685 204241814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 204244864 204245003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 204245615 204245726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 204247365 204247460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 204248821 204248970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 204249184 204249264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 204250546 204250614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 204257353 204257869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 204259258 204259740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 204261306 204261448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 204264942 204265042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 204267475 204267547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 204268208 204268312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 204273626 204273727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3147 nt):
ATGTCCAATAAAACAGGTGGGAAACGCCCGGCTACCACCAACAGTGACATACCCAACCACAACATGGTGT
CCGAGGTCCCTCCAGAGCGGCCCAGCGTCCGGGCAACTCGCACAGCCCGCAAAGCCGTCGCCTTTGGCAA
GCGCTCACACTCCATGAAGCGGAACCCCAATGCACCTGTCACCAAGGCGGGCTGGCTCTTCAAACAGGCC
AGCTCCGGGGTTAAGCAGTGGAACAAGCGCTGGTTCGTCCTGGTGGATCGCTGCCTCTTCTACTATAAAG
ATGAGAAGGAAGAGAGTATCCTGGGCAGCATCCCCCTCCTGAGCTTCCGGGTAGCCGCAGTGCAGCCCTC
AGACAACATCAGCCGGAAACACACGTTTAAGGCTGAGCATGCCGGGGTCCGCACCTACTTCTTCAGTGCC
GAGAGCCCCGAGGAGCAAGAGGCCTGGATCCAGGCCATGGGGGAGGCTGCTCGAGTACAGATCCCTCCAG
CCCAGAAGTCAGTGCCCCAAGCTGTGCGGCACAGCCATGAGAAGCCAGACTCGGAGAACGTCCCACCCAG
CAAGCACCACCAGCAGCCACCCCACAACAGCCTCCCTAAGCCTGAGCCAGAGGCCAAGACTCGAGGGGAG
GGTGATGGCCGAGGCTGTGAGAAGGCAGAGAGAAGGCCTGAGAGGCCAGAAGTCAAGAAAGAGCCTCCGG
TGAAAGCCAATGGCCTCCCAGCTGGACCGGAGCCAGCCTCAGAGCCGGGCAGCCCTTACCCCGAGGGCCC
AAGAGTGCCAGGGGGTGGGGAACAGCCTGCCCAGCCCAATGGCTGGCAGTACCACTCCCCAAGCCGGCCA
GGGAGCACAGCTTTCCCGTCTCAGGATGGAGAGACTGGGGGACACCGGCGGAGTTTCCCACCACGCACCA
ACCCTGACAAAATTGCCCAGCGCAAGAGCTCCATGAACCAGCTTCAGCAGTGGGTGAATCTGCGCCGGGG
GGTACCCCCGCCTGAAGACCTTCGGAGTCCCTCTAGGTTCTATCCTGTGTCTCGCAGGGTCCCTGAGTAC
TATGGCCCCTACTCCTCCCAGTACCCCGATGATTATCAGTACTACCCGCCAGGAGTGCGGCCGGAGAGCA
TCTGTTCCATGCCGGCCTATGATCGGATCAGCCCGCCCTGGGCCCTGGAGGACAAGCGCCATGCCTTCCG
CAATGGGGGTGGCCCTGCCTACCAGCTGCGAGAGTGGAAGGAGCCCGCCAGCTACGGGCGGCAGGATGCC
ACCGTCTGGATCCCAAGCCCCTCCCGGCAGCCAGTCTATTATGATGAGCTGGATGCCGCCTCTAGCTCCC
TGCGCCGCCTGTCCCTGCAGCCCCGCTCCCACTCTGTGCCCCGCTCACCCAGCCAGGGCTCCTACAGCCG
TGCCCGCATTTACTCCCCTGTCCGCTCACCCAGTGCCCGTTTTGAGCGGCTGCCACCTCGCAGTGAGGAC
ATCTATGCTGACCCTGCTGCCTATGTGATGAGGCGATCCATCAGCTCCCCCAAGGTCCCTCCATACCCAG
AAGTGTTCCGGGACAGCCTCCACACCTACAAGTTAAACGAGCAAGACACAGATAAGCTGCTGGGAAAATT
GTGTGAGCAGAACAAGGTGGTGAGGGAGCAGGACCGGCTGGTGCAGCAGCTCCGAGCTGAGAAGGAGAGC
CTGGAAAGTGCCTTGATGGGGACCCACCAGGAGCTGGAGATGTTTGGAAGCCAGCCCGCCTACCCAGAAA
AGCTGCGACACAAAAAGGATTCACTGCAGAACCAGCTCATCAACATCCGCGTGGAGCTGTCTCAGGCGAC
CACGGCCCTGACAAACAGCACCATAGAGTATGAGCACCTCGAGTCTGAGGTCTCTGCCCTGCACGATGAC
CTCTGGGAGCAGCTCAATTTGGACACCCAGAATGAGGTGCTGAACCGGCAAATCCAAAAGGAGATCTGGA
GGATCCAGGACGTGATGGAGGGGCTGAGGAAGAACAACCCCTCCCGGGGCACGGACACCGCCAAGCACAG
AGGAGGACTTGGCCCCTCAGCCACCTACAGCTCCAACAGCCCGGCCAGCCCCCTCAGCTCTGCCAGCCTC
ACCAGCCCCCTGAGCCCCTTTTCACTGGTGTCGGGCTCTCAGGGGTCCCCCACCAAGCCTGGCTCCAACG
AGCCCAAGGCAAACTATGAACAAAGCAAGAAAGACCCCCACCAGACATTGCCCCTGGACACCCCCAGAGA
CATCAGCCTTGTGCCCACCAGGCAAGAGGTAGAGGCAGAGAAGCAGGCAGCTCTCAACAAAGTTGGCGTT
GTGCCCCCTCGGACAAAATCGCCCACTGATGATGAGGTGACCCCATCAGCAGTGGTAAGAAGGAATGCCA
GTGGGCTCACCAATGGACTCTCCTCCCAGGAACGCCCCAAGAGTGCTGTGTTTCCTGGCGAGGGGAAGGT
CAAGATGAGCGTGGAGGAGCAGATTGACCGAATGCGGCGGCACCAGAGTGGCTCCATGAGGGAGAAGCGG
AGGAGCCTGCAGCTCCCGGCCAGCCCGGCCCCCGACCCCAGTCCCCGGCCAGCCTACAAAGTGGTGCGCC
GCCACCGCAGCATCCATGAGGTAGACATCTCCAACCTGGAGGCAGCCCTGCGGGCAGAGGAGCCTGGCGG
GCATGCCTACGAGACACCCCGGGAGGAAATTGCCCGGCTTCGCAAAATGGAGCTAGAGCCCCAGCATTAT
GACGTGGACATCAATAAGGAGCTCTCCACTCCAGACAAAGTCCTCATCCCTGAACGGTACATTGACCTGG
AGCCTGACACTCCCCTGAGCCCTGAGGAGTTGAAGGAGAAGCAGAAGAAGGTGGAGAGGATCAAGACACT
CATTGCCAAATCCAGTATGCAGAACGTGGTGCCCATCGGCGAGGGGGACTCTGTGGACGTGCCCCAGGAC
TCAGAGAGCCAGCTGCAGGAGCAGGAGAAGCGGATTGAAATCTCCTGCGCCCTGGCGACCGAGGCCTCCC
GCAGGGGCCGCATGCTGTCTGTGCAATGTGCCACCCCAAGCCCTCCCACCTCCCCTGCTTCCCCGGCTCC
TCCAGCAAACCCCCTGTCGTCTGAATCCCCACGGGGCGCCGACAGCAGCTATACCATGCGGGTCTGA

Translation (1048 aa):
MSNKTGGKRPATTNSDIPNHNMVSEVPPERPSVRATRTARKAVAFGKRSHSMKRNPNAPVTKAGWLFKQA
SSGVKQWNKRWFVLVDRCLFYYKDEKEESILGSIPLLSFRVAAVQPSDNISRKHTFKAEHAGVRTYFFSA
ESPEEQEAWIQAMGEAARVQIPPAQKSVPQAVRHSHEKPDSENVPPSKHHQQPPHNSLPKPEPEAKTRGE
GDGRGCEKAERRPERPEVKKEPPVKANGLPAGPEPASEPGSPYPEGPRVPGGGEQPAQPNGWQYHSPSRP
GSTAFPSQDGETGGHRRSFPPRTNPDKIAQRKSSMNQLQQWVNLRRGVPPPEDLRSPSRFYPVSRRVPEY
YGPYSSQYPDDYQYYPPGVRPESICSMPAYDRISPPWALEDKRHAFRNGGGPAYQLREWKEPASYGRQDA
TVWIPSPSRQPVYYDELDAASSSLRRLSLQPRSHSVPRSPSQGSYSRARIYSPVRSPSARFERLPPRSED
IYADPAAYVMRRSISSPKVPPYPEVFRDSLHTYKLNEQDTDKLLGKLCEQNKVVREQDRLVQQLRAEKES
LESALMGTHQELEMFGSQPAYPEKLRHKKDSLQNQLINIRVELSQATTALTNSTIEYEHLESEVSALHDD
LWEQLNLDTQNEVLNRQIQKEIWRIQDVMEGLRKNNPSRGTDTAKHRGGLGPSATYSSNSPASPLSSASL
TSPLSPFSLVSGSQGSPTKPGSNEPKANYEQSKKDPHQTLPLDTPRDISLVPTRQEVEAEKQAALNKVGV
VPPRTKSPTDDEVTPSAVVRRNASGLTNGLSSQERPKSAVFPGEGKVKMSVEEQIDRMRRHQSGSMREKR
RSLQLPASPAPDPSPRPAYKVVRRHRSIHEVDISNLEAALRAEEPGGHAYETPREEIARLRKMELEPQHY
DVDINKELSTPDKVLIPERYIDLEPDTPLSPEELKEKQKKVERIKTLIAKSSMQNVVPIGEGDSVDVPQD
SESQLQEQEKRIEISCALATEASRRGRMLSVQCATPSPPTSPASPAPPANPLSSESPRGADSSYTMRV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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