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Report for CCDS14777.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14777.1 Public Homo sapiens Y PCDH11Y 24 110 108 CCDS HistoryNCBI Gene:83259Re-query CCDS DB by CCDS ID:14777.1Re-query CCDS DB by GeneID:83259See the combined annotation on chromosome Y in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14777.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000362095.9 ENSP00000355419.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000362095.9Link to Ensembl Protein Viewer:ENSP00000355419.5Re-query CCDS DB by Nucleotide ID:ENST00000362095Re-query CCDS DB by Protein ID:ENSP00000355419
Original member Current member NCBI NM_032972.3 NP_116754.1 Accepted alive Link to Nucleotide Sequence:NM_032972.3Link to Protein Sequence:NP_116754.1Re-query CCDS DB by Nucleotide ID:NM_032972Re-query CCDS DB by Protein ID:NP_116754Link to BLAST:NP_116754.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_116754.1 1048 Q9BZA8-2 1048 100% 0 0

Chromosomal Locations for CCDS 14777.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome Y (NC_000024.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome YSee the combined annotation on chromosome Y in Sequence Viewer

Chromosome Start Stop Links
Y 5056824 5057459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 5098215 5100707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 5104344 5104361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3147 nt):
ATGTTTAGGGTTGGCTTCTTAATAATTTCTTCTTCCTCTTCTCTCTCTCCTCTTCTTTTGGTCAGTGTTG
TGCGGGTTAATACAACAAACTGTCACAAGTGTTTGTTGTCCGGGACGTACATTTTCGCGGTCCTGCTAGT
ATGCGTGGTGTTCCACTCTGGCGCCCAGGAGAAAAACTACACCATCCGAGAAGAAATTCCAGAAAACGTC
CTGATAGGCAACTTGTTGAAAGACCTTAACTTGTCGCTGATTCCAAACAAGTCCTTGACAACTACTATGC
AGTTCAAGCTAGTGTACAAGACCGGAGATGTGCCACTGATTCGAATTGAAGAGGATACTGGTGAGATCTT
CACTACCGGCGCTCGCATTGATCGTGAGAAATTATGTGCTGGTATCCCAAGGGATGAGCATTGCTTTTAT
GAAGTGGAGGTTGCCATTTTGCCGGATGAAATATTTAGACTGGTTAAGATACGTTTTCTGATAGAAGATA
TAAATGATAATGCACCATTGTTCCCAGCAACAGTTATCAACATATCAATTCCAGAGAACTCGGCTATAAA
CTCTAAATATACTCTCCCAGCGGCTGTTGATCCTGACGTAGGCATAAACGGAGTTCAAAACTACGAACTA
ATTAAGAGTCAAAACATTTTTGGCCTCGATGTCATTGAAACACCAGAAGGAGACAAGATGCCACAACTGA
TTGTTCAAAAGGAGTTAGATAGGGAAGAGAAGGATACCTATGTGATGAAAGTAAAGGTTGAAGATGGTGG
CTTTCCTCAAAGATCCAGTACTGCTATTTTGCAAGTAAGTGTTACTGATACAAATGACAACCACCCAGTC
TTTAAGGAGACAGAGATTGAAGTCAGTATACCAGAAAATGCTCCTGTAGGCACTTCAGTGACACAGCTCC
ATGCCACAGATGCTGACATAGGTGAAAATGCCAAGATCCACTTCTCTTTCAGCAATCTAGTCTCCAACAT
TGCCAGGAGATTATTTCACCTCAATGCCACCACTGGACTTATCACAATCAAAGAACCACTGGATAGGGAA
GAAACACCAAACCACAAGTTACTGGTTTTGGCAAGTGATGGTGGATTGATGCCAGCAAGAGCAATGGTGC
TGGTAAATGTTACAGATGTCAATGATAATGTCCCATCCATTGACATAAGATACATCGTCAATCCTGTCAA
TGACACAGTTGTTCTTTCAGAAAATATTCCACTCAACACCAAAATTGCTCTCATAACTGTGACGGATAAG
GATGCGGACCATAATGGCAGGGTGACATGCTTCACAGATCATGAAATTCCTTTCAGATTAAGGCCAGTAT
TCAGTAATCAGTTCCTCCTGGAGAATGCAGCATATCTTGACTATGAGTCCACAAAAGAATATGCCATTAA
ATTACTGGCTGCAGATGCTGGCAAACCTCCTTTGAATCAGTCAGCAATGCTCTTCATCAAAGTGAAAGAT
GAAAATGACAATGCTCCAGTTTTCACCCAGTCTTTCGTAACTGTTTCTATTCCTGAGAATAACTCTCCTG
GCATCCAGTTGATGAAAGTAAGTGCAACGGATGCAGACAGTGGGCCTAATGCTGAGATCAATTACCTGCT
AGGCCCTGATGCTCCACCTGAATTCAGCCTGGATCGTCGTACAGGCATGCTGACTGTAGTGAAGAAACTA
GATAGAGAAAAAGAGGATAAATATTTATTCACAATTCTGGCAAAAGATAATGGGGTACCACCCTTAACCA
GCAATGTCACAGTCTTTGTAAGCATTATTGATCAGAATGACAATAGCCCAGTTTTCACTCACAATGAATA
CAAATTCTATGTCCCAGAAAACCTTCCAAGGCATGGTACAGTAGGACTAATCACTGTAACTGATCCTGAT
TATGGAGACAATTCTGCAGTTACGCTCTCCATTTTAGATGAGAATGATGACTTCACCATTGATTCACAAA
CTGGTGTCATCCGACCAAATATTTCATTTGATAGAGAAAAACAAGAATCTTACACTTTCTATGTAAAGGC
TGAGGATGGTGGTAGAGTATCACGTTCTTCAAGTGCCAAAGTAACCATAAATGTGGTTGATGTCAATGAC
AACAAACCAGTTTTCATTGTCCCTCCTTACAACTATTCTTATGAATTGGTTCTACCGTCCACTAATCCAG
GCACAGTGGTCTTTCAGGTAATTGCTGTTGACAATGACACTGGCATGAATGCAGAGGTTCGTTACAGCAT
TGTAGGAGGAAACACAAGAGATCTGTTTGCAATCGACCAAGAAACAGGCAACATAACATTGATGGAGAAA
TGTGATGTTACAGACCTTGGTTTACACAGAGTGTTGGTCAAAGCTAATGACTTAGGACAGCCTGATTCTC
TCTTCAGTGTTGTAATTGTCAATCTGTTCGTGAATGAGTCAGTGACCAATGCTACACTGATTAATGAACT
GGTGCGCAAAAGCATTGAAGCACCAGTGACCCCAAATACTGAGATAGCTGATGTATCCTCACCAACTAGT
GACTATGTCAAGATCCTGGTTGCAGCTGTTGCTGGCACCATAACTGTCGTTGTAGTTATTTTCATCACTG
CTGTAGTAAGATGTCGCCAGGCACCACACCTTAAGGCTGCTCAGAAAAACATGCAGAATTCTGAATGGGC
TACCCCAAACCCAGAAAACAGGCAGATGATAATGATGAAGAAAAAGAAAAAGAAGAAGAAGCATTCCCCT
AAGAACCTGCTGCTTAATGTTGTCACTATTGAAGAAACTAAGGCAGATGATGTTGACAGTGATGGAAACA
GAGTCACACTAGACCTTCCTATTGATCTAGAAGAGCAAACAATGGGAAAGTACAATTGGGTAACTACACC
TACTACTTTCAAGCCTGACAGCCCTGATTTGGCCCGACACTACAAATCTGCCTCTCCACAGCCTGCCTTC
CAAATTCAGCCTGAAACTCCCCTGAATTTGAAGCACCACATCATCCAAGAACTGCCTCTCGATAACACCT
TTGTGGCCTGTGACTCTATCTCCAATTGTTCCTCAAGCAGTTCAGATCCCTACAGCGTTTCTGACTGTGG
CTATCCAGTGACAACCTTCGAGGTACCTGTGTCCGTACACACCAGACCGACTGATTCCAGGACATGA

Translation (1048 aa):
MFRVGFLIISSSSSLSPLLLVSVVRVNTTNCHKCLLSGTYIFAVLLVCVVFHSGAQEKNYTIREEIPENV
LIGNLLKDLNLSLIPNKSLTTTMQFKLVYKTGDVPLIRIEEDTGEIFTTGARIDREKLCAGIPRDEHCFY
EVEVAILPDEIFRLVKIRFLIEDINDNAPLFPATVINISIPENSAINSKYTLPAAVDPDVGINGVQNYEL
IKSQNIFGLDVIETPEGDKMPQLIVQKELDREEKDTYVMKVKVEDGGFPQRSSTAILQVSVTDTNDNHPV
FKETEIEVSIPENAPVGTSVTQLHATDADIGENAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDRE
ETPNHKLLVLASDGGLMPARAMVLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDK
DADHNGRVTCFTDHEIPFRLRPVFSNQFLLENAAYLDYESTKEYAIKLLAADAGKPPLNQSAMLFIKVKD
ENDNAPVFTQSFVTVSIPENNSPGIQLMKVSATDADSGPNAEINYLLGPDAPPEFSLDRRTGMLTVVKKL
DREKEDKYLFTILAKDNGVPPLTSNVTVFVSIIDQNDNSPVFTHNEYKFYVPENLPRHGTVGLITVTDPD
YGDNSAVTLSILDENDDFTIDSQTGVIRPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDVND
NKPVFIVPPYNYSYELVLPSTNPGTVVFQVIAVDNDTGMNAEVRYSIVGGNTRDLFAIDQETGNITLMEK
CDVTDLGLHRVLVKANDLGQPDSLFSVVIVNLFVNESVTNATLINELVRKSIEAPVTPNTEIADVSSPTS
DYVKILVAAVAGTITVVVVIFITAVVRCRQAPHLKAAQKNMQNSEWATPNPENRQMIMMKKKKKKKKHSP
KNLLLNVVTIEETKADDVDSDGNRVTLDLPIDLEEQTMGKYNWVTTPTTFKPDSPDLARHYKSASPQPAF
QIQPETPLNLKHHIIQELPLDNTFVACDSISNCSSSSSDPYSVSDCGYPVTTFEVPVSVHTRPTDSRT


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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