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Report for CCDS14812.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14812.1 Public Mus musculus 1 Adhfe1 23 108 98 CCDS HistoryNCBI Gene:76187Re-query CCDS DB by CCDS ID:14812.1Re-query CCDS DB by GeneID:76187See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14812.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000144177.7 ENSMUSP00000116627.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000144177.7Link to Ensembl Protein Viewer:ENSMUSP00000116627.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000144177Re-query CCDS DB by Protein ID:ENSMUSP00000116627
Original member Current member NCBI NM_175236.5 NP_780445.1 Accepted alive Link to Nucleotide Sequence:NM_175236.5Link to Protein Sequence:NP_780445.1Re-query CCDS DB by Nucleotide ID:NM_175236Re-query CCDS DB by Protein ID:NP_780445Link to BLAST:NP_780445.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780445.1 465 Q8R0N6-1 465 100% 0 0

Chromosomal Locations for CCDS 14812.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 9548093 9548151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 9549907 9549944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 9551717 9551757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 9552923 9552976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 9553318 9553472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 9553623 9553819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 9555538 9555615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 9557000 9557105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 9558133 9558285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 9560109 9560207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 9563509 9563587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 9563797 9563893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 9566781 9566938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 9576191 9576274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1398 nt):
ATGGCTGCAGCTGCACGCGCTCGAGTCACACACTTGCTGAGGCACCTACAAAGCACAGCATGCCAGTGCC
CAACTCATTCTCATACTTACTCCCAAGCCCCTGGACCTTCGGGAAAAACAGCAGATTACGCCTTTGAGAT
GGCTGTCTCAAATATTAGATATGGAGCAGGGGTTACGAAGGAAGTAGGCATGGATCTACAGAATATGGGA
GCTAAGAATGTTTGCTTGATGACAGACAAGAACCTCTCCCAGCTCCCTCCTGTACAAATAGTTATGGATT
CCCTATCGAAGAATGGCATCAGTTTTCAGGTTTATGATGATGTAAGGGTGGAACCTACAGATGGAAGCTT
CATGGATGCAATTGAATTTGCCAAAAAGGGAGCGTTTGATGCCTATGTTGCTGTGGGTGGGGGCTCCACC
ATGGACACCTGTAAAGCCGCCAATCTGTATGCATCCAGCCCTCACTCTGAGTTCCTTGATTATGTCAATG
CCCCCATTGGGAAGGGGAAGCCAGTAACTGTGCCTCTTAAACCTCTGATTGCAGTTCCAACTACCTCAGG
GACTGGCAGTGAGACTACCGGGGTTGCCATTTTTGACTATGAGCATTTGAAAGTAAAAACTGGCATTGCT
TCACGAGCCATCAAACCCACCCTGGGACTGGTTGATCCCCTGCACACTCTCCACATGCCTTGCCAGGTGG
TTGCCAACAGTGGCTTCGATGTCCTTTGCCATGCTCTGGAGTCATACACCGCCATTCCCTACAGCATGCG
GAGCCCCTGCCCTTCCAACCCCATCCAACGACCAGCATACCAGGGTAGCAACCCAATCAGCGACATCTGG
GCAGTCCATGCACTGCAGATTGTTGCCAAATATCTGAAGAGGGCTGTCAGAAACCCAGATGATCTGGAAG
CAAGGTCTAAAATGCACTTGGCAAGTGCTTTTGCTGGCATTGGCTTCGGAAATGCTGGTGTTCATCTGTG
CCATGGCATGTCTTACCCAATTTCAGGTTTAGTGAAGACATATAAAGCCAAGGAATATAATGTGGATCAC
CCTCTTGTGCCCCATGGCCTTTCTGTGGTGCTCACCTCTCCTGCAGTGTTCACCTTCACAGCCCAGATGT
TTCCAGAGCGGCACCTGGAGACGGCAGGAATATTAGGAGCCAACATCCGCACTGCCAGGATCCAAGATGC
TGGGCTTGTGTTGGCAGATGCCCTCCGAAAATTCCTATTTGACCTAAATGTTGATGACGGTCTGGCTGCT
CTTGGTTATTCCAAGGATGACATTCCTTCATTGGTGAAAGGAACACTGCCCCAGGAAAGGGTCACGAAGC
TCGCACCTCGTGCCCAGTCAGAAGAGGATTTGTCTGCTTTGTTTGAAGCATCCATGAAACTGTACTAA

Translation (465 aa):
MAAAARARVTHLLRHLQSTACQCPTHSHTYSQAPGPSGKTADYAFEMAVSNIRYGAGVTKEVGMDLQNMG
AKNVCLMTDKNLSQLPPVQIVMDSLSKNGISFQVYDDVRVEPTDGSFMDAIEFAKKGAFDAYVAVGGGST
MDTCKAANLYASSPHSEFLDYVNAPIGKGKPVTVPLKPLIAVPTTSGTGSETTGVAIFDYEHLKVKTGIA
SRAIKPTLGLVDPLHTLHMPCQVVANSGFDVLCHALESYTAIPYSMRSPCPSNPIQRPAYQGSNPISDIW
AVHALQIVAKYLKRAVRNPDDLEARSKMHLASAFAGIGFGNAGVHLCHGMSYPISGLVKTYKAKEYNVDH
PLVPHGLSVVLTSPAVFTFTAQMFPERHLETAGILGANIRTARIQDAGLVLADALRKFLFDLNVDDGLAA
LGYSKDDIPSLVKGTLPQERVTKLAPRAQSEEDLSALFEASMKLY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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