NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS14901.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14901.1 Reviewed, update pending Mus musculus 1 Chst10 23 108 98 CCDS HistoryNCBI Gene:98388Re-query CCDS DB by CCDS ID:14901.1Re-query CCDS DB by GeneID:98388See the combined annotation on chromosome 1 in Sequence Viewer

Public Note for CCDS 14901.1
The coding region has been updated to start at a downstream in-frame start codon that is supported by conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 14901.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027249.11 ENSMUSP00000027249.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027249.11Link to Ensembl Protein Viewer:ENSMUSP00000027249.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000027249Re-query CCDS DB by Protein ID:ENSMUSP00000027249
Original member NCBI NM_145142.2 NP_660124.2 Updated not alive Link to Nucleotide Sequence:NM_145142.2Link to Protein Sequence:NP_660124.2Re-query CCDS DB by Nucleotide ID:NM_145142Re-query CCDS DB by Protein ID:NP_660124
Current member NCBI NM_145142.3 NP_660124.3 Pending alive Link to Nucleotide Sequence:NM_145142.3Link to Protein Sequence:NP_660124.3Re-query CCDS DB by Nucleotide ID:NM_145142Re-query CCDS DB by Protein ID:NP_660124Link to BLAST:NP_660124.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_660124.3 356 Q6PGK7-1 356 100% 0 0

Chromosomal Locations for CCDS 14901.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 38865498 38866035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38867981 38868086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38871601 38871835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38873949 38874040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38884350 38884481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38895937 38895958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1125 nt):
ATGGAAAATGTGAACCCATCAGGAAGGATCATCGAATGGCCCCTGTCTGACAACATGCACCATCAGTGGC
TCCTGCTGGCTGCATGCTTTTGGGTGATTTTCATGTTCATGGTGGCCAGCAAGTTCATCACGTTGACCTT
TAAGGATCCGGATGGGTATAGTGCCAAACAGGAGTTTGTGTTCCTGACGACCATGCCGGAAGCAGAGAAG
CTAAGAGGAGAGAAGCATTTTCCTGAAGTCCCGAAGCCAACTGGGAAGATGCTTTCGGACAGCCGTCCTG
ATCAGCCCCCGGTTTATCTGGAGCGGCTGGAGCTCATTAGAAACACCTGCAAGGAGGAGGCTCTGCGGAA
CCTCTCACACACCGAGGTCTCGAAGTTCGTCCTGGATCGAATATTTGTCTGTGACAAGCACAAGATTCTT
TTCTGTCAGACTCCCAAGGTGGGCAACACCCAGTGGAAGAAAGTGCTGATCGTCCTAAATGGAGCATTTT
CTTCCATTGAAGAGATTCCTGAAAATGTAGTCCATGACCATGAGAAAAATGGCCTTCCACGCCTCTCTTC
CTTCAGCAAAATAGGAATTCAGAAGCGATTGAAAACATACTTCAAGTTTTTTATTGTGAGAGATCCCTTT
GAAAGACTGATTTCTGCCTTTAAGGATAAGTTTGTTCACAATCCTCGATTCGAGCCTTGGTACAGGCATG
AGATAGCCCCAGGCATTATTAGAAAGTACCGGAAGAACCGGACAGAGACCCGGGGGATCCAGTTTGAAGA
TTTTGTGCGCTACCTGGGTGATCCAAACCGCAGGTGGTTAGACCTTCAGTTTGGGGACCATATCATCCAC
TGGGTGACCTACGTTGAACTCTGTGCGCCCTGTGAGATCAAGTACAGTGTGGTCGGACACCATGAGACCC
TGGAGGCAGATGCCCCGTACATCCTGAAAGAAGCTGGCATAGACCATCTGGTGTCATACCCCACCATCCC
TCCGGGCATCACCATGTACAACAGAACCAAGGTAGAACAGTACTTCCTGGGCATCAGCAAACGAGACATC
CGGCGTCTCTATGCCCGCTTTGAAGGGGACTTCAAGCTCTTTGGGTATCAGAAACCAGATTTCTTGCTAA
ATTAA

Translation (374 aa):
MENVNPSGRIIEWPLSDNMHHQWLLLAACFWVIFMFMVASKFITLTFKDPDGYSAKQEFVFLTTMPEAEK
LRGEKHFPEVPKPTGKMLSDSRPDQPPVYLERLELIRNTCKEEALRNLSHTEVSKFVLDRIFVCDKHKIL
FCQTPKVGNTQWKKVLIVLNGAFSSIEEIPENVVHDHEKNGLPRLSSFSKIGIQKRLKTYFKFFIVRDPF
ERLISAFKDKFVHNPRFEPWYRHEIAPGIIRKYRKNRTETRGIQFEDFVRYLGDPNRRWLDLQFGDHIIH
WVTYVELCAPCEIKYSVVGHHETLEADAPYILKEAGIDHLVSYPTIPPGITMYNRTKVEQYFLGISKRDI
RRLYARFEGDFKLFGYQKPDFLLN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH