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Report for CCDS14988.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14988.1 Public Mus musculus 1 Wdr12 23 108 98 CCDS HistoryNCBI Gene:57750Re-query CCDS DB by CCDS ID:14988.1Re-query CCDS DB by GeneID:57750See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14988.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027173.14 ENSMUSP00000027173.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027173.14Link to Ensembl Protein Viewer:ENSMUSP00000027173.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000027173Re-query CCDS DB by Protein ID:ENSMUSP00000027173
Original member Current member EBI ENSMUST00000122038.7 ENSMUSP00000113148.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000122038.7Link to Ensembl Protein Viewer:ENSMUSP00000113148.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000122038Re-query CCDS DB by Protein ID:ENSMUSP00000113148
Original member Current member EBI ENSMUST00000117438.7 ENSMUSP00000113494.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117438.7Link to Ensembl Protein Viewer:ENSMUSP00000113494.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000117438Re-query CCDS DB by Protein ID:ENSMUSP00000113494
Original member Current member NCBI NM_001199060.1 NP_001185989.1 Accepted alive Link to Nucleotide Sequence:NM_001199060.1Link to Protein Sequence:NP_001185989.1Re-query CCDS DB by Nucleotide ID:NM_001199060Re-query CCDS DB by Protein ID:NP_001185989Link to BLAST:NP_001185989.1
Original member Current member NCBI NM_001199061.1 NP_001185990.1 Accepted alive Link to Nucleotide Sequence:NM_001199061.1Link to Protein Sequence:NP_001185990.1Re-query CCDS DB by Nucleotide ID:NM_001199061Re-query CCDS DB by Protein ID:NP_001185990Link to BLAST:NP_001185990.1
Original member Current member NCBI NM_021312.5 NP_067287.1 Accepted alive Link to Nucleotide Sequence:NM_021312.5Link to Protein Sequence:NP_067287.1Re-query CCDS DB by Nucleotide ID:NM_021312Re-query CCDS DB by Protein ID:NP_067287Link to BLAST:NP_067287.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001185989.1 423 Q9JJA4 423 100% 0 0
NP_001185990.1 423 Q9JJA4 423 100% 0 0
NP_067287.1 423 Q9JJA4 423 100% 0 0

Chromosomal Locations for CCDS 14988.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 60078164 60078241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 60080519 60080591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 60082037 60082169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 60082291 60082396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 60082509 60082649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 60083755 60083840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 60085711 60085756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 60087046 60087200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 60088041 60088156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 60089252 60089358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 60091020 60091114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 60094432 60094526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 60097507 60097547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1272 nt):
ATGGCACAACTCCAGGCACGTTTCTACAGCGAGAACAAGAAATACGCAGTGGATGATGTCCCTTTCTCAA
TCCCTGCCGCTGCTGAAGTTGCGGACCTTAGTAACATTATCAATAAGTTGCTGGAGACCAAAAATGAACT
CCACAAGCATGTCGAGTTTGATTTCCTTATCAAGGGCCAGTTTCTTCGAGTGCCCTTGGTCAAACACATG
GAACTGGAGAACATTTCATCGGAAGAGGTTGTGGAACTAGAATATGTGGAAAAGTACACCGCACCCCAGC
CAGAGCAGTGCATGTTCCATGATGACTGGATCAGCTCAATTGAAGGGGCAGAAGAATGGATCCTGTCTGG
TTCTTATGATAAGACTTCTCGGATCTGGTCCTTGGAAGGAAAGTCGATAATGACAATTGTGGGACATACA
GATGTTGTGAAAGATGTGGCTTGGGTGAAAAAAGACAGTTTGTCCTGCTTACTACTGACGGCCTCGATGG
ACCAGACTGTTCTCTTATGGGAGTGGAATGTAGAGAAGAACAAAGTGAAAGCTCTGCACTGCTGCCGAGG
GCATGCTGGGAGTGTGGACGCCATCGCAGTCGATAGCTCGGGAGCTAAGTTTTGCAGTGGCTCCTGGGAT
AAGATGCTAAAGATCTGGTCTACAGTCCCTACAGATGAAGAAGATGAAATGGAAGAAGCCACAAATCGAC
CAAGAAAAAAGCAAAAAACAGAACAATTGGGACTAACAAGAACACCCTTGGTGACCCTCTCTGGCCACAC
AGAAGCAATTTCCTCAGTCCTTTGGTCAGACGCTGAAGAAATCTGTAGTGCATCTTGGGATCACACAATT
AGAGTGTGGGATGTTGAGTCTGGCGGTCTTAAGTCAACTCTGACAGGAAATAAAGTGTTTAATTGTATTT
CCTATTCTCCCCTTTGTAAACGTTTGGCATCTGGAAGCACAGACAGGCATATTAGACTGTGGGATCCCCG
AACTAAAGATGGTTCTTTGGTGTCGCTGTCTCTCACCTCACACACAGGCTGGGTGACATCAGTGAAGTGG
TCTCCTACCCATGAACAGCAGCTCATCTCGGGCTCTTTAGATAACATTGTGAAGCTATGGGATACAAGAA
GCTGTAAGGCTCCTCTCTACGATCTAGCTGCTCATGAAGACAAAGTTCTAAGTGTGGACTGGACAGACAC
AGGGCTACTTCTGAGTGGAGGAGCAGACAATAAATTGTATTCCTACAGCTATTCCCCTACCACTTCCCAT
GTGGGGGCTTGA

Translation (423 aa):
MAQLQARFYSENKKYAVDDVPFSIPAAAEVADLSNIINKLLETKNELHKHVEFDFLIKGQFLRVPLVKHM
ELENISSEEVVELEYVEKYTAPQPEQCMFHDDWISSIEGAEEWILSGSYDKTSRIWSLEGKSIMTIVGHT
DVVKDVAWVKKDSLSCLLLTASMDQTVLLWEWNVEKNKVKALHCCRGHAGSVDAIAVDSSGAKFCSGSWD
KMLKIWSTVPTDEEDEMEEATNRPRKKQKTEQLGLTRTPLVTLSGHTEAISSVLWSDAEEICSASWDHTI
RVWDVESGGLKSTLTGNKVFNCISYSPLCKRLASGSTDRHIRLWDPRTKDGSLVSLSLTSHTGWVTSVKW
SPTHEQQLISGSLDNIVKLWDTRSCKAPLYDLAAHEDKVLSVDWTDTGLLLSGGADNKLYSYSYSPTTSH
VGA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
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