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Report for CCDS1499.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1499.1 Public Homo sapiens 1 SLC30A1 24 110 108 CCDS HistoryNCBI Gene:7779Re-query CCDS DB by CCDS ID:1499.1Re-query CCDS DB by GeneID:7779See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1499.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367001.5 ENSP00000355968.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000367001.5Link to Ensembl Protein Viewer:ENSP00000355968.4Re-query CCDS DB by Nucleotide ID:ENST00000367001Re-query CCDS DB by Protein ID:ENSP00000355968
Original member Current member NCBI NM_021194.3 NP_067017.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_021194.3Link to Protein Sequence:NP_067017.2Re-query CCDS DB by Nucleotide ID:NM_021194Re-query CCDS DB by Protein ID:NP_067017Link to BLAST:NP_067017.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067017.2 507 Q9Y6M5 507 100% 0 0

Chromosomal Locations for CCDS 1499.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 211575388 211576289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 211577991 211578612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1524 nt):
ATGGGGTGTTGGGGTCGGAACCGGGGCCGGCTGCTGTGCATGCTGGCGCTGACCTTCATGTTCATGGTGC
TGGAGGTGGTGGTGAGCCGGGTGACCTCGTCGCTGGCGATGCTCTCCGACTCCTTCCACATGCTGTCGGA
CGTGCTGGCGCTGGTGGTGGCGCTGGTGGCCGAGCGCTTCGCCCGGCGGACCCACGCCACCCAGAAGAAC
ACGTTCGGCTGGATCCGAGCCGAGGTAATGGGGGCTCTGGTGAACGCCATCTTCCTGACTGGCCTCTGTT
TCGCCATCCTGCTGGAGGCCATCGAGCGCTTCATCGAGCCGCACGAGATGCAGCAGCCGCTGGTGGTCCT
TGGGGTCGGCGTGGCCGGGCTGCTGGTCAACGTGCTGGGGCTCTGCCTCTTCCACCATCACAGCGGCTTC
AGCCAGGACTCCGGCCACGGCCACTCGCACGGGGGTCACGGCCACGGCCACGGCCTCCCCAAGGGGCCTC
GCGTTAAGAGCACCCGCCCCGGGAGCAGCGACATCAACGTGGCCCCGGGCGAGCAGGGTCCCGACCAGGA
GGAGACCAACACCCTGGTGGCCAATACCAGCAACTCCAACGGGCTGAAATTGGACCCCGCAGACCCAGAA
AACCCCAGAAGTGGTGATACAGTGGAAGTACAAGTGAATGGAAATCTTGTCAGAGAACCTGACCATATGG
AACTGGAAGAAGATAGGGCTGGACAACTTAACATGCGTGGAGTTTTTCTGCATGTCCTTGGAGATGCCTT
GGGTTCAGTGATTGTAGTAGTAAATGCCTTAGTCTTTTACTTTTCTTGGAAAGGTTGTTCTGAAGGGGAT
TTTTGTGTGAATCCATGTTTCCCTGACCCCTGCAAAGCATTTGTAGAAATAATTAATAGTACTCATGCAT
CAGTTTATGAGGCTGGTCCTTGCTGGGTGCTATATTTAGATCCAACTCTTTGTGTTGTAATGGTTTGTAT
ACTTCTTTACACAACCTATCCATTACTTAAGGAATCTGCTCTTATTCTTCTACAAACTGTTCCTAAACAA
ATTGATATCAGAAATTTGATAAAAGAACTTCGAAATGTTGAAGGAGTTGAGGAAGTTCATGAATTACATG
TTTGGCAACTTGCTGGAAGCAGAATCATTGCCACTGCTCACATAAAATGTGAAGATCCAACATCATACAT
GGAGGTGGCTAAAACCATTAAAGACGTTTTTCATAATCACGGAATTCACGCTACTACCATTCAGCCTGAA
TTTGCTAGTGTAGGCTCTAAATCAAGTGTAGTTCCGTGTGAACTTGCCTGCAGAACCCAGTGTGCTTTGA
AGCAATGTTGTGGGACACTACCACAAGCCCCTTCTGGAAAGGATGCAGAAAAGACCCCAGCAGTTAGCAT
TTCTTGTTTAGAACTTAGTAACAATCTAGAGAAGAAGCCCAGGAGGACTAAAGCTGAAAACATCCCTGCT
GTTGTGATAGAGATTAAAAACATGCCAAACAAACAACCTGAATCATCTTTGTGA

Translation (507 aa):
MGCWGRNRGRLLCMLALTFMFMVLEVVVSRVTSSLAMLSDSFHMLSDVLALVVALVAERFARRTHATQKN
TFGWIRAEVMGALVNAIFLTGLCFAILLEAIERFIEPHEMQQPLVVLGVGVAGLLVNVLGLCLFHHHSGF
SQDSGHGHSHGGHGHGHGLPKGPRVKSTRPGSSDINVAPGEQGPDQEETNTLVANTSNSNGLKLDPADPE
NPRSGDTVEVQVNGNLVREPDHMELEEDRAGQLNMRGVFLHVLGDALGSVIVVVNALVFYFSWKGCSEGD
FCVNPCFPDPCKAFVEIINSTHASVYEAGPCWVLYLDPTLCVVMVCILLYTTYPLLKESALILLQTVPKQ
IDIRNLIKELRNVEGVEEVHELHVWQLAGSRIIATAHIKCEDPTSYMEVAKTIKDVFHNHGIHATTIQPE
FASVGSKSSVVPCELACRTQCALKQCCGTLPQAPSGKDAEKTPAVSISCLELSNNLEKKPRRTKAENIPA
VVIEIKNMPNKQPESSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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