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Report for CCDS15004.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15004.1 Public Mus musculus 1 Creb1 23 108 98 CCDS HistoryNCBI Gene:12912Re-query CCDS DB by CCDS ID:15004.1Re-query CCDS DB by GeneID:12912See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15004.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049932.11 ENSMUSP00000059973.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049932.11Link to Ensembl Protein Viewer:ENSMUSP00000059973.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000049932Re-query CCDS DB by Protein ID:ENSMUSP00000059973
Original member Current member EBI ENSMUST00000190348.1 ENSMUSP00000140112.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000190348.1Link to Ensembl Protein Viewer:ENSMUSP00000140112.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000190348Re-query CCDS DB by Protein ID:ENSMUSP00000140112
Original member Current member NCBI NM_009952.2 NP_034082.1 Accepted alive Link to Nucleotide Sequence:NM_009952.2Link to Protein Sequence:NP_034082.1Re-query CCDS DB by Nucleotide ID:NM_009952Re-query CCDS DB by Protein ID:NP_034082Link to BLAST:NP_034082.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034082.1 341 Q01147-1 341 100% 0 0

Chromosomal Locations for CCDS 15004.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 64550857 64550970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64558503 64558649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64559727 64559768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64566217 64566317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64570134 64570276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64574073 64574255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64576179 64576329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64597234 64597378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1026 nt):
ATGACCATGGAATCTGGAGCAGACAACCAGCAGAGTGGAGATGCTGCTGTAACAGAAGCTGAAAATCAAC
AAATGACAGTTCAAGCCCAGCCACAGATTGCCACATTAGCCCAGGTATCCATGCCAGCAGCTCATGCAAC
ATCATCTGCTCCCACTGTAACCTTAGTGCAGCTGCCCAATGGGCAGACAGTCCAGGTCCATGGCGTTATC
CAGGCGGCCCAGCCATCAGTTATCCAGTCTCCACAAGTCCAAACAGTTCAGTCTTCCTGTAAGGACTTAA
AAAGACTTTTCTCCGGAACTCAGATTTCAACTATTGCAGAAAGTGAAGATTCACAGGAGTCTGTGGATAG
TGTAACTGATTCCCAAAAACGAAGGGAAATCCTTTCAAGGAGGCCTTCCTACAGGAAAATTTTGAATGAC
TTATCTTCTGATGCACCAGGGGTGCCAAGGATTGAAGAAGAAAAGTCAGAAGAGGAGACTTCAGCCCCTG
CCATCACCACTGTAACAGTGCCAACCCCCATTTACCAAACTAGCAGTGGGCAGTACATTGCCATTACCCA
GGGAGGAGCAATACAGCTGGCTAACAATGGTACGGATGGGGTACAGGGCCTGCAGACATTAACCATGACC
AATGCAGCTGCCACTCAGCCGGGTACTACCATTCTACAGTATGCACAGACCACTGATGGACAGCAGATTC
TAGTGCCCAGCAACCAAGTTGTTGTTCAAGCTGCCTCAGGCGATGTACAAACATACCAGATCCGCACAGC
ACCCACGAGCACCATTGCCCCTGGAGTTGTTATGGCGTCCTCCCCAGCACTTCCTACACAGCCTGCTGAA
GAAGCAGCACGGAAGAGAGAGGTCCGTCTAATGAAGAACAGGGAGGCAGCAAGAGAATGTCGTAGAAAGA
AGAAAGAATATGTGAAATGTTTAGAGAACAGAGTGGCAGTGCTTGAAAACCAAAACAAAACATTGATTGA
GGAGCTAAAAGCACTTAAGGACCTTTACTGCCACAAATCAGATTAA

Translation (341 aa):
MTMESGADNQQSGDAAVTEAENQQMTVQAQPQIATLAQVSMPAAHATSSAPTVTLVQLPNGQTVQVHGVI
QAAQPSVIQSPQVQTVQSSCKDLKRLFSGTQISTIAESEDSQESVDSVTDSQKRREILSRRPSYRKILND
LSSDAPGVPRIEEEKSEEETSAPAITTVTVPTPIYQTSSGQYIAITQGGAIQLANNGTDGVQGLQTLTMT
NAAATQPGTTILQYAQTTDGQQILVPSNQVVVQAASGDVQTYQIRTAPTSTIAPGVVMASSPALPTQPAE
EAARKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKTLIEELKALKDLYCHKSD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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