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Report for CCDS15005.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15005.1 Public Mus musculus 1 Creb1 23 108 98 CCDS HistoryNCBI Gene:12912Re-query CCDS DB by CCDS ID:15005.1Re-query CCDS DB by GeneID:12912See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15005.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000087366.10 ENSMUSP00000084624.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000087366.10Link to Ensembl Protein Viewer:ENSMUSP00000084624.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000087366Re-query CCDS DB by Protein ID:ENSMUSP00000084624
Original member Current member EBI ENSMUST00000185594.6 ENSMUSP00000139995.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000185594.6Link to Ensembl Protein Viewer:ENSMUSP00000139995.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000185594Re-query CCDS DB by Protein ID:ENSMUSP00000139995
Original member Current member NCBI NM_133828.2 NP_598589.2 Accepted alive Link to Nucleotide Sequence:NM_133828.2Link to Protein Sequence:NP_598589.2Re-query CCDS DB by Nucleotide ID:NM_133828Re-query CCDS DB by Protein ID:NP_598589Link to BLAST:NP_598589.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598589.2 327 Q01147-2 327 100% 0 0

Chromosomal Locations for CCDS 15005.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 64550857 64550970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64558503 64558649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64566217 64566317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64570134 64570276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64574073 64574255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64576179 64576329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64597234 64597378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (984 nt):
ATGACCATGGAATCTGGAGCAGACAACCAGCAGAGTGGAGATGCTGCTGTAACAGAAGCTGAAAATCAAC
AAATGACAGTTCAAGCCCAGCCACAGATTGCCACATTAGCCCAGGTATCCATGCCAGCAGCTCATGCAAC
ATCATCTGCTCCCACTGTAACCTTAGTGCAGCTGCCCAATGGGCAGACAGTCCAGGTCCATGGCGTTATC
CAGGCGGCCCAGCCATCAGTTATCCAGTCTCCACAAGTCCAAACAGTTCAGATTTCAACTATTGCAGAAA
GTGAAGATTCACAGGAGTCTGTGGATAGTGTAACTGATTCCCAAAAACGAAGGGAAATCCTTTCAAGGAG
GCCTTCCTACAGGAAAATTTTGAATGACTTATCTTCTGATGCACCAGGGGTGCCAAGGATTGAAGAAGAA
AAGTCAGAAGAGGAGACTTCAGCCCCTGCCATCACCACTGTAACAGTGCCAACCCCCATTTACCAAACTA
GCAGTGGGCAGTACATTGCCATTACCCAGGGAGGAGCAATACAGCTGGCTAACAATGGTACGGATGGGGT
ACAGGGCCTGCAGACATTAACCATGACCAATGCAGCTGCCACTCAGCCGGGTACTACCATTCTACAGTAT
GCACAGACCACTGATGGACAGCAGATTCTAGTGCCCAGCAACCAAGTTGTTGTTCAAGCTGCCTCAGGCG
ATGTACAAACATACCAGATCCGCACAGCACCCACGAGCACCATTGCCCCTGGAGTTGTTATGGCGTCCTC
CCCAGCACTTCCTACACAGCCTGCTGAAGAAGCAGCACGGAAGAGAGAGGTCCGTCTAATGAAGAACAGG
GAGGCAGCAAGAGAATGTCGTAGAAAGAAGAAAGAATATGTGAAATGTTTAGAGAACAGAGTGGCAGTGC
TTGAAAACCAAAACAAAACATTGATTGAGGAGCTAAAAGCACTTAAGGACCTTTACTGCCACAAATCAGA
TTAA

Translation (327 aa):
MTMESGADNQQSGDAAVTEAENQQMTVQAQPQIATLAQVSMPAAHATSSAPTVTLVQLPNGQTVQVHGVI
QAAQPSVIQSPQVQTVQISTIAESEDSQESVDSVTDSQKRREILSRRPSYRKILNDLSSDAPGVPRIEEE
KSEEETSAPAITTVTVPTPIYQTSSGQYIAITQGGAIQLANNGTDGVQGLQTLTMTNAAATQPGTTILQY
AQTTDGQQILVPSNQVVVQAASGDVQTYQIRTAPTSTIAPGVVMASSPALPTQPAEEAARKREVRLMKNR
EAARECRRKKKEYVKCLENRVAVLENQNKTLIEELKALKDLYCHKSD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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