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Report for CCDS15082.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15082.1 Public Mus musculus 1 Pax3 23 108 98 CCDS HistoryNCBI Gene:18505Re-query CCDS DB by CCDS ID:15082.1Re-query CCDS DB by GeneID:18505See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15082.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000087086.6 ENSMUSP00000084320.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000087086.6Link to Ensembl Protein Viewer:ENSMUSP00000084320.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000087086Re-query CCDS DB by Protein ID:ENSMUSP00000084320
Original member Current member NCBI NM_008781.4 NP_032807.3 Accepted alive Link to Nucleotide Sequence:NM_008781.4Link to Protein Sequence:NP_032807.3Re-query CCDS DB by Nucleotide ID:NM_008781Re-query CCDS DB by Protein ID:NP_032807Link to BLAST:NP_032807.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032807.3 479 P24610 479 100% 0 0

Chromosomal Locations for CCDS 15082.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 78103308 78103574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78121578 78121792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78122591 78122756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78132228 78132433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78192442 78192576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78193740 78193869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78195251 78195486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78196665 78196749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1440 nt):
ATGACCACGCTGGCCGGCGCTGTGCCCAGGATGATGCGGCCCGGCCCGGGGCAGAATTACCCACGCAGCG
GCTTCCCGCTGGAAGTGTCCACCCCTCTTGGCCAGGGCCGAGTCAACCAGCTCGGAGGAGTATTTATCAA
CGGCAGGCCTCTGCCCAACCATATCCGCCACAAGATAGTGGAGATGGCCCACCATGGCATTCGGCCTTGC
GTCATTTCTCGCCAGCTTCGCGTGTCCCATGGTTGCGTCTCTAAGATCCTGTGCAGGTACCAGGAGACAG
GCTCCATCCGACCTGGTGCCATCGGCGGCAGCAAACCCAAGCAGGTGACAACGCCTGACGTGGAGAAGAA
AATTGAGGAATACAAAAGAGAGAACCCGGGCATGTTTAGCTGGGAAATCAGAGACAAATTGCTCAAGGAC
GCTGTCTGTGATCGGAACACTGTGCCCTCAGTGAGTTCTATCAGCCGCATCCTGAGGAGTAAATTTGGAA
AAGGAGAAGAGGAGGAGGCGGATCTAGAAAGGAAGGAAGCAGAAGAAAGCGAGAAAAAGGCTAAACACAG
CATCGATGGCATCCTGAGTGAGCGAGCCTCTGCACCTCAGTCAGATGAAGGCTCCGATATTGACTCTGAA
CCTGATTTACCGCTGAAGAGGAAGCAGCGCAGGAGCAGAACCACCTTCACGGCAGAGCAGCTGGAGGAAC
TGGAGCGGGCTTTCGAGAGAACCCACTACCCAGACATTTACACCAGGGAGGAGCTGGCCCAGAGGGCGAA
GCTTACCGAGGCCCGAGTGCAGGTCTGGTTTAGCAACCGCCGTGCAAGATGGAGGAAACAAGCTGGAGCC
AATCAACTGATGGCTTTCAACCATCTCATTCCGGGGGGATTCCCTCCCACCGCCATGCCGACCCTGCCAA
CATACCAGCTGTCGGAGACCTCTTACCAGCCCACGTCTATTCCACAAGCCGTGTCAGATCCCAGTAGCAC
CGTCCACAGACCTCAGCCGCTTCCTCCGAGCACTGTACACCAAAGCACTATTCCTTCGAACGCAGACAGC
AGCTCTGCCTACTGCCTCCCCAGCACCAGGCATGGATTTTCAAGCTATACAGACAGCTTTGTGCCTCCAT
CGGGGCCCTCCAACCCCATGAACCCCACCATCGGCAATGGCCTTTCACCTCAGGTAATGGGACTTCTGAC
CAACCACGGTGGGGTACCGCACCAGCCTCAGACCGACTATGCTCTCTCCCCTCTCACTGGGGGCCTGGAA
CCCACGACCACGGTGTCAGCCAGCTGCAGTCAGAGACTGGAACATATGAAGAATGTGGACAGTCTGCCCA
CATCTCAGCCCTATTGTCCCCCCACCTATAGCACCGCAGGCTACAGTATGGACCCTGTCACAGGCTACCA
GTATGGGCAGTATGGACAAAGTAAGCCTTGGACGTTCTAG

Translation (479 aa):
MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPC
VISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKD
AVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEESEKKAKHSIDGILSERASAPQSDEGSDIDSE
PDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGA
NQLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNADS
SSAYCLPSTRHGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTNHGGVPHQPQTDYALSPLTGGLE
PTTTVSASCSQRLEHMKNVDSLPTSQPYCPPTYSTAGYSMDPVTGYQYGQYGQSKPWTF


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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