NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS15129.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15129.1 Public Mus musculus 1 Chrnd 23 108 98 CCDS HistoryNCBI Gene:11447Re-query CCDS DB by CCDS ID:15129.1Re-query CCDS DB by GeneID:11447See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15129.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000073252.8 ENSMUSP00000072983.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000073252.8Link to Ensembl Protein Viewer:ENSMUSP00000072983.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000073252Re-query CCDS DB by Protein ID:ENSMUSP00000072983
Original member Current member NCBI NM_021600.3 NP_067611.2 Accepted alive Link to Nucleotide Sequence:NM_021600.3Link to Protein Sequence:NP_067611.2Re-query CCDS DB by Nucleotide ID:NM_021600Re-query CCDS DB by Protein ID:NP_067611Link to BLAST:NP_067611.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067611.2 520 P02716 520 100% 0 0

Chromosomal Locations for CCDS 15129.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 87190691 87190742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87190975 87191129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87191520 87191564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87192214 87192323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87192486 87192641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87192846 87192955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87194800 87195000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87195485 87195596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87195683 87195797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87197283 87197487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87197575 87197693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87198580 87198762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1563 nt):
ATGGCAGGGCCTGTGCTCACACTGGGGCTGCTGGCTGCCCTTGTTGTGTGTGCCCTCCCAGGCAGTTGGG
GCCTGAATGAGGAACAAAGGCTGATCCAGCACCTATTCAATGAGAAGGGCTACGACAAAGACCTGCGGCC
GGTGGCTCGAAAGGAGGACAAAGTGGATGTCGCCCTAAGTCTCACCCTCTCCAACCTCATCTCCCTGAAA
GAAGTGGAGGAGACCCTCACCACCAACGTGTGGATAGATCATGCCTGGGTAGACAGCCGTCTACAGTGGG
ATGCCAACGACTTCGGGAACATCACTGTCCTGCGCCTGCCCCCTGACATGGTGTGGCTACCAGAGATTGT
ACTGGAGAACAACAATGATGGCTCGTTCCAGATTTCTTATGCCTGCAATGTGCTTGTCTATGACTCGGGC
TATGTGACCTGGCTGCCGCCCGCCATCTTCCGCTCCTCCTGCCCCATCTCAGTCACCTACTTCCCTTTCG
ACTGGCAGAACTGCTCCCTCAAATTCAGTTCACTCAAGTATACAGCCAAGGAGATCACACTTAGCCTGAA
GCAGGAGGAGGAAAACAACCGCTCTTACCCCATCGAGTGGATCATCATTGACCCTGAAGGTTTCACAGAG
AACGGTGAGTGGGAGATAGTGCATCGGGCAGCCAAGCTCAATGTGGACCCCAGTGTCCCGATGGACAGCA
CCAACCACCAAGATGTCACCTTCTACCTTATCATCCGCCGCAAGCCCCTCTTCTACATCATCAACATTCT
GGTACCCTGCGTGCTCATCTCCTTCATGATCAACCTAGTCTTCTACCTGCCAGGCGACTGTGGAGAGAAG
ACCTCCGTGGCCATCTCAGTGCTCCTGGCCCAATCTGTCTTCCTGCTGCTTATCTCCAAGAGGCTGCCGG
CCACTTCCATGGCCATCCCCTTGGTAGGCAAGTTCCTGCTTTTCGGCATGGTGCTGGTCACCATGGTGGT
GGTGATCTGTGTCATCGTACTGAACATCCACTTCCGGACGCCCAGCACCCATGTGCTGTCTGAGGGAGTC
AAGAAGTTCTTCCTGGAGACCCTGCCCAAGCTCCTGCACATGTCCCGCCCAGCAGAGGAAGACCCAGGCC
CCAGGGCTCTCATCCGGAGAAGCAGCTCTCTGGGATACATCTGCAAAGCAGAGGAGTATTTCTCACTTAA
GTCCCGCAGTGACCTCATGTTTGAGAAGCAATCAGAGCGGCATGGGCTGGCCCGGCGCCTCACCACAGCC
CGCAGGCCTCCAGCAAGCTCTGAGCAGGTCCAACAGGAGCTCTTCAATGAGATGAAGCCAGCTGTGGATG
GGGCAAACTTCATCGTCAACCATATGAGAGACCAAAACAGTTACAATGAGGAGAAGGACAACTGGAACCA
GGTGGCCCGCACAGTGGACCGTCTCTGCCTGTTTGTGGTGACACCCGTCATGGTGGTGGGCACAGCCTGG
ATCTTCCTGCAGGGTGTCTACAACCAGCCCCCACTCCAGCCTTTCCCTGGGGACCCCTTCTCCTATAGCG
AACAGGACAAGCGCTTCATCTAG

Translation (520 aa):
MAGPVLTLGLLAALVVCALPGSWGLNEEQRLIQHLFNEKGYDKDLRPVARKEDKVDVALSLTLSNLISLK
EVEETLTTNVWIDHAWVDSRLQWDANDFGNITVLRLPPDMVWLPEIVLENNNDGSFQISYACNVLVYDSG
YVTWLPPAIFRSSCPISVTYFPFDWQNCSLKFSSLKYTAKEITLSLKQEEENNRSYPIEWIIIDPEGFTE
NGEWEIVHRAAKLNVDPSVPMDSTNHQDVTFYLIIRRKPLFYIINILVPCVLISFMINLVFYLPGDCGEK
TSVAISVLLAQSVFLLLISKRLPATSMAIPLVGKFLLFGMVLVTMVVVICVIVLNIHFRTPSTHVLSEGV
KKFFLETLPKLLHMSRPAEEDPGPRALIRRSSSLGYICKAEEYFSLKSRSDLMFEKQSERHGLARRLTTA
RRPPASSEQVQQELFNEMKPAVDGANFIVNHMRDQNSYNEEKDNWNQVARTVDRLCLFVVTPVMVVGTAW
IFLQGVYNQPPLQPFPGDPFSYSEQDKRFI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH