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Report for CCDS15231.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15231.1 Public Mus musculus 1 Dbi 23 108 98 CCDS HistoryNCBI Gene:13167Re-query CCDS DB by CCDS ID:15231.1Re-query CCDS DB by GeneID:13167See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15231.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000151708.2 ENSMUSP00000114705.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000151708.2Link to Ensembl Protein Viewer:ENSMUSP00000114705.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000151708Re-query CCDS DB by Protein ID:ENSMUSP00000114705
Original member Current member NCBI NM_001037999.2 NP_001033088.1 Accepted alive Link to Nucleotide Sequence:NM_001037999.2Link to Protein Sequence:NP_001033088.1Re-query CCDS DB by Nucleotide ID:NM_001037999Re-query CCDS DB by Protein ID:NP_001033088Link to BLAST:NP_001033088.1

Chromosomal Locations for CCDS 15231.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 120113460 120113533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 120116386 120116448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 120119895 120120012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 120120762 120120914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (408 nt):
ATGCTGTGGGTTTGGGGACAGCCGGGTCTATTTCCTCAGATATCCCGCAGCTCTTCTGGGATCCGAGCCC
AGCTCATAGCCTGGGGAGCGGAACTTTTTCCCTTGCAGATATGTAAAACTGCCACCCACGCCGGAACTGC
CAGAGAGTTGCCGGCTGAATTTGACAAAGCCGCTGAGGAGGTGAAGCGCCTCAAGACTCAGCCAACTGAT
GAAGAGATGCTGTTCATCTACAGTCACTTCAAACAAGCTACTGTGGGCGATGTAAATACAGATCGGCCGG
GGCTCTTGGACCTCAAGGGCAAAGCCAAGTGGGACTCGTGGAACAAGCTGAAAGGGACTTCCAAGGAAAG
TGCCATGAAGACCTATGTGGAAAAGGTAGACGAGCTAAAGAAGAAATACGGAATATAA

Translation (135 aa):
MLWVWGQPGLFPQISRSSSGIRAQLIAWGAELFPLQICKTATHAGTARELPAEFDKAAEEVKRLKTQPTD
EEMLFIYSHFKQATVGDVNTDRPGLLDLKGKAKWDSWNKLKGTSKESAMKTYVEKVDELKKKYGI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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