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Report for CCDS15307.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15307.2 Public Mus musculus 1 Mgat4f 23 108 98 CCDS HistoryNCBI Gene:240755Re-query CCDS DB by CCDS ID:15307.2Re-query CCDS DB by GeneID:240755See the combined annotation on chromosome 1 in Sequence Viewer

Public Note for CCDS 15307.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and protein data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 15307.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000162187.1 ENSMUSP00000124251.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000162187.1Link to Ensembl Protein Viewer:ENSMUSP00000124251.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000162187Re-query CCDS DB by Protein ID:ENSMUSP00000124251
Original member Current member NCBI NM_173771.4 NP_776132.2 Accepted alive Link to Nucleotide Sequence:NM_173771.4Link to Protein Sequence:NP_776132.2Re-query CCDS DB by Nucleotide ID:NM_173771Re-query CCDS DB by Protein ID:NP_776132Link to BLAST:NP_776132.2

Chromosomal Locations for CCDS 15307.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 134386218 134386227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134387875 134388005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134388684 134388840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134389790 134390931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1440 nt):
ATGCCCAAAACTGCTCCTGGTGCCATGCGAGGCTGCCTGTGGATGTGCGTCCGAGTCCTGGCATCCCTAG
TCATCCTGGGGTTCTTTCTTCAAGACAATATCGCAGCAGCACATGTAAAGCAGCAACATAACACATTGCT
GAGTGAAAAGAAGAAAATGATTCAGCAGATAGCTCAGGAGGAAATCAGCTCCAAAATCAAGAACCATTTG
AAATACTTCACAGAGATGCAGGAAAGTTCCCATGTTCTCCAGCATGTCACCTACACAGTTCTGGCTGGAG
CCTCTTACCAGCCAAAGAGGATGCTGACGGTGGGCATCTTCTCAGTGCCACATAGCCACAGGACTCACCT
CTTGGACACCATGACATCCTTGTTCCAAGCTTCCTCGGAACAGGACCTGGAGTATATGCTGGTCTTGGTC
CTCCTGTCAGACACTGACCCCACATGGCTCAACCAAACAGTTGCCAACATTTCAGGTCTTTTCATGCCTC
ACATTGACTCTGGGAGGCTGCTGGTGGTCCATGGTCGGCTTGGTGGCTCCAGAGCAAAGAGCAGAAATGA
TACCTCCCCCTGTGGAAAACTATATTCTAGGCAAAAAACAAGTCTTGCCCTTCTCATGAATTTTGCCCTC
AACCTCTCTGAATACTTCCTGTTGCTAGGAGATAATGTGAAGACTGCCCCCAAGTTTCTGGCTAATGTCT
TCTGGGCCTTGCCGGCCTGGAAACAGCTCCCTTGGGTGAGCCTAGACTTCTCCAGCATGCCGCTCTCCGG
AAAGGTTTTCCATACTGAGGACCTTTCCCGCTTCGTTTCCTTCTTGCTCCTCTTCCCCAAGGACATTCCC
ACTCACTTGCTTCTCTCTGAGTTCAGGCTTCTCTTGTCTCAAAATGTCCCTATCCGCCTCAGTCCCTCCG
TCTTCTACCGAATGGACAGGGACTCTGAGTTTGAAGACACATGCTTTCCTGCGAAGCGAGACAAAGACTT
GGGCAGACCAGACAATCCTGCTGGGACTGTCTTTACAGACATGATCTCGTTTTGGAATACAAATCCACAG
TTTGCCTACTTTCTCAATGATGACTACTTCTGGGCCTTGGACCCTCTAGAAGGCAACTACTTGCTGGTGG
TTCTAGATAAGCCACAAAAAGTCATCAAGGTAGCAGTGGAGACAGGCTCTACTAAGAATAGGTTGAACTT
ATTAAAACATGGGCAACTATTACTGGGCTACAGCCCCATGGAATACCCCCAACGCTGTGCTCATTATAAC
TTGGTAGGACCATTGGTGAGAGGTCAGTTGGAGCAGATGGTATTTTATGAAGAAGATGCTGTGATGGAGA
TTAGTTGTATAAAATTGCTGGTGACATCATCTCATGACTACCCCGTCAGGATCATGCAGATCAAAGTCTG
GACAAAAGTGGAGGACGAGGAGAGTTGGAGGCTACTGTAA

Translation (479 aa):
MPKTAPGAMRGCLWMCVRVLASLVILGFFLQDNIAAAHVKQQHNTLLSEKKKMIQQIAQEEISSKIKNHL
KYFTEMQESSHVLQHVTYTVLAGASYQPKRMLTVGIFSVPHSHRTHLLDTMTSLFQASSEQDLEYMLVLV
LLSDTDPTWLNQTVANISGLFMPHIDSGRLLVVHGRLGGSRAKSRNDTSPCGKLYSRQKTSLALLMNFAL
NLSEYFLLLGDNVKTAPKFLANVFWALPAWKQLPWVSLDFSSMPLSGKVFHTEDLSRFVSFLLLFPKDIP
THLLLSEFRLLLSQNVPIRLSPSVFYRMDRDSEFEDTCFPAKRDKDLGRPDNPAGTVFTDMISFWNTNPQ
FAYFLNDDYFWALDPLEGNYLLVVLDKPQKVIKVAVETGSTKNRLNLLKHGQLLLGYSPMEYPQRCAHYN
LVGPLVRGQLEQMVFYEEDAVMEISCIKLLVTSSHDYPVRIMQIKVWTKVEDEESWRLL


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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