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Report for CCDS15377.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15377.1 Public Mus musculus 1 Rnasel 23 108 98 CCDS HistoryNCBI Gene:24014Re-query CCDS DB by CCDS ID:15377.1Re-query CCDS DB by GeneID:24014See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15377.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000086209.9 ENSMUSP00000083385.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000086209.9Link to Ensembl Protein Viewer:ENSMUSP00000083385.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000086209Re-query CCDS DB by Protein ID:ENSMUSP00000083385
Original member Current member NCBI NM_011882.2 NP_036012.1 Accepted alive Link to Nucleotide Sequence:NM_011882.2Link to Protein Sequence:NP_036012.1Re-query CCDS DB by Nucleotide ID:NM_011882Re-query CCDS DB by Protein ID:NP_036012Link to BLAST:NP_036012.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036012.1 735 Q05921 735 100% 0 0

Chromosomal Locations for CCDS 15377.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 153753740 153755213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153755951 153756036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153758383 153758588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153759544 153759676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153760775 153760911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153762119 153762290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2208 nt):
ATGGAGACCCCGGATTATAACACACCTCAGGGTGGAACCCCATCAGCGGGAAGTCAGAGGACCGTTGTCG
AAGATGATTCTTCGTTGATCAAAGCTGTTCAGAAGGGAGATGTTGTCAGGGTCCAGCAATTGTTAGAAAA
AGGGGCTGATGCCAATGCCTGTGAAGACACCTGGGGCTGGACACCTTTGCACAACGCAGTGCAAGCTGGC
AGGGTAGACATTGTGAACCTCCTGCTTAGTCATGGTGCTGACCCTCATCGGAGGAAGAAGAATGGGGCCA
CCCCCTTCATCATTGCTGGGATCCAGGGAGATGTGAAACTGCTCGAGATTCTCCTCTCTTGTGGTGCAGA
CGTCAATGAGTGTGACGAGAACGGATTCACGGCTTTCATGGAAGCTGCTGAGCGTGGTAACGCTGAAGCC
TTAAGATTCCTTTTTGCTAAGGGAGCCAATGTGAATTTGCGACGACAGACAACGAAGGACAAAAGGCGAT
TGAAGCAAGGAGGCGCCACAGCTCTCATGAGCGCTGCTGAGAAGGGCCACCTGGAAGTCCTGAGAATTCT
CCTCAATGACATGAAGGCAGAAGTCGATGCTCGGGACAACATGGGCAGAAATGCCCTGATCCGTACTCTG
CTGAACTGGGATTGTGAAAATGTGGAGGAGATTACTTCAATCCTGATTCAGCACGGGGCTGATGTTAACG
TGAGAGGAGAAAGAGGGAAAACACCCCTCATCGCAGCAGTGGAGAGGAAGCACACAGGCTTGGTGCAGAT
GCTCCTGAGTCGGGAAGGCATAAACATAGATGCCAGGGATAACGAGGGCAAGACAGCTCTGCTAATTGCT
GTTGATAAACAACTGAAGGAAATTGTCCAGTTGCTTCTTGAAAAGGGAGCTGATAAGTGTGACGATCTTG
TTTGGATAGCCAGGAGGAATCATGACTATCACCTTGTAAAGCTTCTCCTCCCTTATGTAGCTAATCCTGA
CACCGACCCTCCTGCTGGAGACTGGTCGCCTCACAGTTCACGTTGGGGGACAGCCTTGAAAAGCCTCCAC
AGTATGACTCGACCCATGATTGGCAAACTCAAGATCTTCATTCATGATGACTATAAAATTGCTGGCACTT
CCGAAGGGGCTGTCTACCTAGGGATCTATGACAATCGAGAAGTGGCTGTGAAGGTCTTCCGTGAGAATAG
CCCACGTGGATGTAAGGAAGTCTCTTGTCTGCGGGACTGCGGTGACCACAGTAACTTAGTGGCTTTCTAT
GGAAGAGAGGACGATAAGGGCTGTTTATATGTGTGTGTGTCCCTGTGTGAGTGGACACTGGAAGAGTTCC
TGAGGTTGCCCAGAGAGGAACCTGTGGAGAACGGGGAAGATAAGTTTGCCCACAGCATCCTATTATCTAT
ATTTGAGGGTGTTCAAAAACTACACTTGCATGGATATTCCCATCAGGACCTGCAACCACAAAACATCTTA
ATAGATTCCAAGAAAGCTGTCCGGCTGGCAGATTTTGATCAGAGCATCCGATGGATGGGAGAGTCACAGA
TGGTCAGGAGAGACTTGGAGGATCTTGGACGGCTGGTTCTCTACGTGGTAATGAAAGGTGAGATCCCCTT
TGAGACACTAAAGACTCAGAATGATGAAGTGCTGCTTACAATGTCTCCAGATGAGGAGACTAAGGACCTC
ATTCATTGCCTGTTTTCTCCTGGAGAAAATGTCAAGAACTGCCTGGTAGACCTGCTTGGCCATCCTTTCT
TTTGGACTTGGGAGAACCGCTATAGAACACTCCGGAATGTGGGAAATGAATCTGACATCAAAGTACGGAA
ATGTAAAAGTGATCTTCTCAGACTACTGCAGCATCAGACACTTGAGCCTCCCAGAAGCTTTGACCAGTGG
ACATCTAAGATCGACAAAAATGTTATGGATGAAATGAATCATTTCTACGAAAAGAGAAAAAAAAACCCTT
ATCAGGATACTGTAGGTGATCTGCTGAAGTTTATTCGGAATATAGGCGAACACATCAATGAGGAAAAAAA
GCGGGGAATGAAGGAGATACTTGGAGATCCTTCTCGTTATTTTCAGGAGACATTTCCAGATCTTGTAATC
TATATCTACAAGAAACTAAAGGAAACAGAATACAGAAAACACTTCCCACAGCCTCCACCACGCCTCAGCG
TTCCAGAGGCAGTGGGACCAGGGGGCATACAGAGCTGA

Translation (735 aa):
METPDYNTPQGGTPSAGSQRTVVEDDSSLIKAVQKGDVVRVQQLLEKGADANACEDTWGWTPLHNAVQAG
RVDIVNLLLSHGADPHRRKKNGATPFIIAGIQGDVKLLEILLSCGADVNECDENGFTAFMEAAERGNAEA
LRFLFAKGANVNLRRQTTKDKRRLKQGGATALMSAAEKGHLEVLRILLNDMKAEVDARDNMGRNALIRTL
LNWDCENVEEITSILIQHGADVNVRGERGKTPLIAAVERKHTGLVQMLLSREGINIDARDNEGKTALLIA
VDKQLKEIVQLLLEKGADKCDDLVWIARRNHDYHLVKLLLPYVANPDTDPPAGDWSPHSSRWGTALKSLH
SMTRPMIGKLKIFIHDDYKIAGTSEGAVYLGIYDNREVAVKVFRENSPRGCKEVSCLRDCGDHSNLVAFY
GREDDKGCLYVCVSLCEWTLEEFLRLPREEPVENGEDKFAHSILLSIFEGVQKLHLHGYSHQDLQPQNIL
IDSKKAVRLADFDQSIRWMGESQMVRRDLEDLGRLVLYVVMKGEIPFETLKTQNDEVLLTMSPDEETKDL
IHCLFSPGENVKNCLVDLLGHPFFWTWENRYRTLRNVGNESDIKVRKCKSDLLRLLQHQTLEPPRSFDQW
TSKIDKNVMDEMNHFYEKRKKNPYQDTVGDLLKFIRNIGEHINEEKKRGMKEILGDPSRYFQETFPDLVI
YIYKKLKETEYRKHFPQPPPRLSVPEAVGPGGIQS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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