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Report for CCDS15383.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15383.1 Public Mus musculus 1 Mr1 23 108 98 CCDS HistoryNCBI Gene:15064Re-query CCDS DB by CCDS ID:15383.1Re-query CCDS DB by GeneID:15064See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15383.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027744.9 ENSMUSP00000027744.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027744.9Link to Ensembl Protein Viewer:ENSMUSP00000027744.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000027744Re-query CCDS DB by Protein ID:ENSMUSP00000027744
Original member Current member NCBI NM_008209.5 NP_032235.1 Accepted alive Link to Nucleotide Sequence:NM_008209.5Link to Protein Sequence:NP_032235.1Re-query CCDS DB by Nucleotide ID:NM_008209Re-query CCDS DB by Protein ID:NP_032235Link to BLAST:NP_032235.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032235.1 341 Q8HWB0-1 341 100% 0 0

Chromosomal Locations for CCDS 15383.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 155129267 155129325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155130633 155130731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155132360 155132635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155136575 155136850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155137514 155137774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155146632 155146686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1026 nt):
ATGATGCTCCTGTTACCTCTGCTCGCTGTATTCTTGGTGAAGCGAAGCCATACTCGGACCCACTCGCTGA
GATATTTTCGTCTAGCTGTTTCCGATCCTGGTCCCGTCGTCCCTGAATTTATCTCTGTTGGGTATGTGGA
CTCACACCCTATCACTACATACGACAGTGTCACTCGACAGAAGGAGCCGAAAGCTCCATGGATGGCAGAG
AACCTGGCACCTGATCACTGGGAGAGGTACACTCAGCTGCTAAGGGGCTGGCAGCAGACATTCAAGGCGG
AGCTGAGGCACCTACAGAGGCACTACAACCACTCAGGGCTTCACACCTACCAGAGAATGATTGGCTGTGA
GTTGCTAGAAGATGGCAGCACCACAGGGTTTCTCCAGTATGCATATGATGGACAAGATTTCATCATCTTC
AATAAAGACACCCTCTCCTGGTTGGCCATGGATTATGTGGCTCACATCACCAAGCAAGCATGGGAGGCCA
ACCTGCATGAGTTGCAATACCAAAAGAACTGGCTGGAAGAAGAATGCATTGCCTGGCTAAAGAGGTTCTT
GGAATATGGAAGAGATACCCTAGAAAGAACAGAGCATCCAGTGGTAAGAACAACTCGAAAGGAAACTTTT
CCAGGGATTACAACTTTCTTCTGCAGAGCTCATGGCTTCTACCCACCAGAAATTTCCATGACATGGATGA
AAAATGGGGAAGAAATTGCCCAAGAAGTGGATTACGGAGGGGTACTTCCCAGCGGGGATGGAACCTATCA
AACGTGGCTGTCAGTTAATCTGGATCCTCAGAGCAATGATGTTTATTCTTGTCATGTGGAGCACTGTGGT
CGCCAAATGGTTCTGGAGGCCCCTCGGGAATCAGGGGACATCCTTCGAGTGAGCACGATCTCTGGAACCA
CAATTCTCATCATCGCCCTGGCTGGAGTTGGTGTTCTGATCTGGAGAAGGTCACAAGAACTAAAAGAAGT
CATGTACCAACCCACCCAAGTGAATGAGGGAAGCTCTCCCTCTTAG

Translation (341 aa):
MMLLLPLLAVFLVKRSHTRTHSLRYFRLAVSDPGPVVPEFISVGYVDSHPITTYDSVTRQKEPKAPWMAE
NLAPDHWERYTQLLRGWQQTFKAELRHLQRHYNHSGLHTYQRMIGCELLEDGSTTGFLQYAYDGQDFIIF
NKDTLSWLAMDYVAHITKQAWEANLHELQYQKNWLEEECIAWLKRFLEYGRDTLERTEHPVVRTTRKETF
PGITTFFCRAHGFYPPEISMTWMKNGEEIAQEVDYGGVLPSGDGTYQTWLSVNLDPQSNDVYSCHVEHCG
RQMVLEAPRESGDILRVSTISGTTILIIALAGVGVLIWRRSQELKEVMYQPTQVNEGSSPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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