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Report for CCDS15400.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15400.1 Public Mus musculus 1 Sec16b 23 108 98 CCDS HistoryNCBI Gene:89867Re-query CCDS DB by CCDS ID:15400.1Re-query CCDS DB by GeneID:89867See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15400.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027881.14 ENSMUSP00000027881.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027881.14Link to Ensembl Protein Viewer:ENSMUSP00000027881.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000027881Re-query CCDS DB by Protein ID:ENSMUSP00000027881
Original member Current member EBI ENSMUST00000086130.8 ENSMUSP00000083300.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000086130.8Link to Ensembl Protein Viewer:ENSMUSP00000083300.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000086130Re-query CCDS DB by Protein ID:ENSMUSP00000083300
Original member Current member EBI ENSMUST00000111700.7 ENSMUSP00000107329.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111700.7Link to Ensembl Protein Viewer:ENSMUSP00000107329.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111700Re-query CCDS DB by Protein ID:ENSMUSP00000107329
Original member Current member NCBI NM_001159986.1 NP_001153458.1 Accepted alive Link to Nucleotide Sequence:NM_001159986.1Link to Protein Sequence:NP_001153458.1Re-query CCDS DB by Nucleotide ID:NM_001159986Re-query CCDS DB by Protein ID:NP_001153458Link to BLAST:NP_001153458.1
Original member Current member NCBI NM_033354.3 NP_203505.3 Accepted alive Link to Nucleotide Sequence:NM_033354.3Link to Protein Sequence:NP_203505.3Re-query CCDS DB by Nucleotide ID:NM_033354Re-query CCDS DB by Protein ID:NP_203505Link to BLAST:NP_203505.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153458.1 1051 Q91XT4 1051 100% 0 0
NP_203505.3 1051 Q91XT4 1051 100% 0 0

Chromosomal Locations for CCDS 15400.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 157529224 157529504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 157531280 157531392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 157532053 157532173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 157533079 157533178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 157534629 157534773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 157535361 157535512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 157535852 157535913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 157537518 157537653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 157538113 157538343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 157543866 157543963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 157546199 157546280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 157551007 157551124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 157552933 157553044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 157554747 157554852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 157556765 157556905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 157558035 157558148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 157559449 157559521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 157560683 157560976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 157561516 157561583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 157564447 157564596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 157564761 157564859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 157565421 157565529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 157565653 157565732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 157566628 157566726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 157567276 157567347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3156 nt):
ATGGAACCTTGGGTTCCCCAGACACAAGGAAGGACCACGGGACCATCAAGGGATACAAATAGAGGACTTC
AGAGTGGACATTATAGACCCCGTCTGCATTCTCAGTACAGTGGAGATAAGTACCACCAATGGCAAGATGC
CCACAAGAACTCAAAGTCACAGCAGGACCTCAGGGATGACCACCAACAGTCTCACTCTGTATCCAGGAGT
GGGGAGTGGTCCCAGCCTGTGTCTGGTGCTGACTACTTGAAAGGATCTTATCCCAGTCACCTGTACTCAA
GGTCAGGCTATGGGGACCCCTATCAGAGGTACCACACTCCGACACCGAGGGATGAGTATGCTTATGGAAA
TTACTACTACCACGGACATCCACAGCTGCTGCCGGAAGAAAGAGTGGCAAGGCAAGGGAGTCCTTATATC
TGGCATGAAGATCATGGAGACCAGAGGTACTTCGGCGAGCATCATCGGGAGAAGCACAATGGTACATTTG
GAGCAAACAGTGATACCCAGTTCCAATTTACCAGTAAGAATCCATACCGAGACAGCCCTGCTTCTGTGTC
TGGACAGGAACAGCCTGGGGAATTCTTTCCAGAGAGTGAAGCCCAGAAACAAAAGCCATTGCTGACCAGC
AAATCCAGCCTTCTCCAGCAGCACGAGTCTGGGCTCAGCTCTAGTAGCTACGAGCTCAGTCAGTACATGA
CAGCTGCCCCCGAGGAGTATGAACCTATGGTGTCAGCAGCTTGGAGGCCTATTCAGGCTGATGACACCTC
AGCGACAGTTCCAAAGGCACCTATGAGGTTCTATGTTCCCCATGTGTCTGTGAGCTTTGGGCCAGGAGGC
CAGCTAGTGTGTGTCCCCCCCAACTCTCCTGCTGATGGACAAACGGCCCTCGTTGAAGTGCACAGCATGG
AGGTTTTACTTAATGATTTTGAGGATCAGGAGGAGATGAGAGCTTTCCCAGGGCCCCTTATTAGGGAGGA
CATACACAAGGTGGATATCATGACGTTTTGTCAGCAGAAAGCAACGCAGTGTCTCAAATCTGAGACACCA
GGGAGCAGAGACTCAGCTCTACTTTGGCAACTGCTGGTTCTCCTTTGTCGACAGAATGGGTCCATGGTGG
GATCTGACATTGCTGAGCTGCTGATGCAGGACTGCAAGAAGCTGGAGAAGTACAAGAGGCAGCCCCCTGT
AGCCAACCTCATCAACCTGACTGACGAGGACTGGCCGGTACTGAGCTCTGGGACTCGTGATCTCCTCACT
GGGGAGATTCCCCCCAATGTGGATACGCCAGCGCAGATCGTGGAGAAATTCACCAAGCTGCTCTACTACG
GAAGGAAGAAGGAGGCTTTGGAGTGGGCTATGAAGAACCACTTGTGGGGACATGCCTTGTTCCTAGCCAG
TAAGATGGACCCAAGGACCTACAACTGGGTCATGAGTGGTTTCACCAGTACGCTGGCGCTCAATGACCCT
CTGCAGACCCTCTTCCAGCTCATGTCAGGAAGGATTCCACAAGCAGCCACGGTTTGTGGAGACAAACAGT
GGGGAGACTGGCGGCCCCACTTGGCTGTGATCCTGTCAAATCAGGCTGGAGATACAGAGTTGTACCAGCG
AGCGATTGTCAGCATGGGGGATACCCTGGCTGGAAAAGGGCTTGTGGAGGCATCTCACTTCTGCTATCTC
ATGGCTCATGTGCCCTTTGGTCACTATACGGTGAAGACAGATCATCTGGCCTTGGTGGGCAGTAGCCACA
GTCAAGAGTTTATGAAATTTGCAACAATTGAGGCTATCCAGCGGACGGAAATCTTCGAGTACTGCCAGAT
GCTGGGCCGCCCCAAATCCTTCATCCCTTCTTTCCAGGTGTATAAGCTCCTCTATGCCTCCCGTCTGGCA
GATTATGGCCTGGCATCCCAGGCCTTGCATTACTGTGAAGCCATTGGTGCAGCTGTCTTGAGCCAGGAAG
GGAGCAGCCACCCTGTGCTATTAGCGGAGCTCATCAAGCTCGCAGAGAAACTGAAGCTGTCAGATCCTCT
GGTTTTAGAAAGACGCCGTGGGGACAGGGACCTGGAACCAGATTGGCTTGTGCAACTGCGGAGGAAGCAC
AAGGACCTGGAGCAAAATAGAACAGGAGCCCCGAGAGATCCTGATTCGACTCCTTCAGATATTTATGGAG
CTGGAGGAACAACAGACACTCCCTACCCTGATCTCTCTGGCCATCAAAACTACTCAGAAGACTCTGAGTA
CAGCTCCACCTTGTGGTCAACAGCAGAGCAGACAAGCCTGACCAATCCCCTCGCACAGCAGTCTTTCCCC
CTGCAGCGAGATACCTATTCAGGACACATGGGAACCCCAGTGCCTCTCTACTCAGTTCCTGCAACCCACT
TGGCAGTGACGAGTGGAGCCAGTGGTAGCAGTGTGGCAGTGACGGGGACTCCTGGGGGAAGGGTTGGAGA
GGATATGCTGCGGACACATCCTGCCTTTGGAGAGAACACAATGACTCAAGAACCCCTGGAAGATCCTGAT
GGTCTCGAAGTCATTTCCAGTCTTCAGACACCAGCGGCTCCCAGGGTTCCAAGTTTTTCTGAGGATTCTG
CTGCTTCAGCCAAGGAGGATGAGGAGGGGTCTTCTGATGGAGCAGACAAACCATCTCACCCCGATGCTTC
ACAGAAAGGAAAGCTGGGAGATGGGAAGAATACAAAGAGCTCGGGATTCGGCTGGTTCAGCTGGTTTCGA
TCAAAGCCTGCCAGCAGTGTGTCCACCTCTGGAGATGAAGACTCCTCGGACAGTTCTGACTCAGAGGAGT
CTCCCAGAGCATCTTCTCCTCACCATGCGAGCCCAGGCCTCTCACCAACACCTCCTCTCACATCCCCATC
CCTGCCAGGTGCCAGCACCTTCTCGAGAGGCACAGGTGGGAGTATTCTCCAAGGATCCTCAAACAGTAGT
GGAATCGCTGAAGGCATGGGGATTGGAGGGTTCTCGGGGACACAGGGTGTTTCTTCTGAGTTCTACTCCC
AGCCTGGTGCCCTGCCTCCTCCGCCTACCTTGCAAGGTGCTGTTCCTCTCTACAATCCATCTCAGGTCCC
TCAGCTTCCCACTGCTAGTAGCCTGAACCGGCCAAACCGCCTAGCCCAGCGCCGCTACCCAACCCAGCCA
TGCTGA

Translation (1051 aa):
MEPWVPQTQGRTTGPSRDTNRGLQSGHYRPRLHSQYSGDKYHQWQDAHKNSKSQQDLRDDHQQSHSVSRS
GEWSQPVSGADYLKGSYPSHLYSRSGYGDPYQRYHTPTPRDEYAYGNYYYHGHPQLLPEERVARQGSPYI
WHEDHGDQRYFGEHHREKHNGTFGANSDTQFQFTSKNPYRDSPASVSGQEQPGEFFPESEAQKQKPLLTS
KSSLLQQHESGLSSSSYELSQYMTAAPEEYEPMVSAAWRPIQADDTSATVPKAPMRFYVPHVSVSFGPGG
QLVCVPPNSPADGQTALVEVHSMEVLLNDFEDQEEMRAFPGPLIREDIHKVDIMTFCQQKATQCLKSETP
GSRDSALLWQLLVLLCRQNGSMVGSDIAELLMQDCKKLEKYKRQPPVANLINLTDEDWPVLSSGTRDLLT
GEIPPNVDTPAQIVEKFTKLLYYGRKKEALEWAMKNHLWGHALFLASKMDPRTYNWVMSGFTSTLALNDP
LQTLFQLMSGRIPQAATVCGDKQWGDWRPHLAVILSNQAGDTELYQRAIVSMGDTLAGKGLVEASHFCYL
MAHVPFGHYTVKTDHLALVGSSHSQEFMKFATIEAIQRTEIFEYCQMLGRPKSFIPSFQVYKLLYASRLA
DYGLASQALHYCEAIGAAVLSQEGSSHPVLLAELIKLAEKLKLSDPLVLERRRGDRDLEPDWLVQLRRKH
KDLEQNRTGAPRDPDSTPSDIYGAGGTTDTPYPDLSGHQNYSEDSEYSSTLWSTAEQTSLTNPLAQQSFP
LQRDTYSGHMGTPVPLYSVPATHLAVTSGASGSSVAVTGTPGGRVGEDMLRTHPAFGENTMTQEPLEDPD
GLEVISSLQTPAAPRVPSFSEDSAASAKEDEEGSSDGADKPSHPDASQKGKLGDGKNTKSSGFGWFSWFR
SKPASSVSTSGDEDSSDSSDSEESPRASSPHHASPGLSPTPPLTSPSLPGASTFSRGTGGSILQGSSNSS
GIAEGMGIGGFSGTQGVSSEFYSQPGALPPPPTLQGAVPLYNPSQVPQLPTASSLNRPNRLAQRRYPTQP
C


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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