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Report for CCDS15404.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15404.1 Public Mus musculus 1 Tnn 23 108 98 CCDS HistoryNCBI Gene:329278Re-query CCDS DB by CCDS ID:15404.1Re-query CCDS DB by GeneID:329278See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15404.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039178.11 ENSMUSP00000039452.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039178.11Link to Ensembl Protein Viewer:ENSMUSP00000039452.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000039178Re-query CCDS DB by Protein ID:ENSMUSP00000039452
Original member Current member NCBI NM_177839.3 NP_808507.2 Accepted alive Link to Nucleotide Sequence:NM_177839.3Link to Protein Sequence:NP_808507.2Re-query CCDS DB by Nucleotide ID:NM_177839Re-query CCDS DB by Protein ID:NP_808507Link to BLAST:NP_808507.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808507.2 1560 Q80Z71-1 1560 100% 0 0

Chromosomal Locations for CCDS 15404.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 160086031 160086168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 160088393 160088556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 160097194 160097361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 160098213 160098309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 160104827 160104978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 160105398 160105530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 160107011 160107141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 160110246 160110509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 160114491 160114754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 160116070 160116333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 160118339 160118602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 160120498 160120761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 160122655 160122918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 160125353 160125616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 160126332 160126595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 160130684 160130947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 160139249 160139338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 160140587 160140772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 160144983 160145246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 160146012 160146386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 160147447 160147855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4683 nt):
ATGGGTCTCTGGGGGATGCTCGCCTTCCCCCTGGGATTTCTGCTTGCTTCTGTGCTCCTGGTGGCTTCGG
CCCCAGCCACTCCAGAGTCTCCCGGCTGCAGCAACAAAGAGCAACAGGTCACTGTTAGCCACACCTACAA
GATTGACGTGCCCAAGTCTGCTCTGGTTCAAGTAGAGACCGACCCACAGTCACTCAGCGATGATGGGACA
TCACTCTTGGCTCCCGGGGAGGATGGGGAGGAGCAGAACATTATCTTCAGGCACAACATCCGTCTTCAGA
CACCGCAGAAGAATTGCGACCTGGCAGACAGTGTCCAGGACCTGCTAGCCCGGATGAAAAAGCTGGAGGA
AGAGATGGCAGAGCTGAAGGAGCAGTGCAATACCAACCGCTGCTGCCAGGGGGCTGCTGATCTGAGCCGT
CACTGCAGTGGCCACGGGACCTTCCTCCCTGAGACCTGCAGCTGCCACTGTGACCAGGGCTGGGAGGGCG
CAGACTGTGATCAGCCCACCTGTCCTGGGGCTTGCAACGGCCACGGGCGCTGTGTGGATGGGCAGTGCGT
GTGTGACGCGCCCTATGTGGGGGTCGACTGCGCCTACGCCGCCTGTCCCCAGGACTGCAGTGGGCATGGC
GTGTGCGTGCAGGGTGTCTGCCAGTGCCACGAGGACTTCACAGCAGAGGACTGCAGCGAGCAGCGCTGTC
CTGGCGACTGTAGTGGCAATGGTTTCTGTGACACTGGCGAGTGTTACTGTGAGATGGGCTTTACTGGCCC
CGACTGTTCCCAGGTGGTGGCTCCTCAGGGCCTGCAGTTGCTCAAGAGCACGGAGAACTCTCTGCTGGTG
AGTTGGGAGCCCTCCAGTGAGGTAGACTACTACCTGCTCAGCTACTACCCCCTGGGGAAGGAGCAAGCTA
CAAAACAGGTCCGGGTACCCAAGGAGCAGCACACCTATGACATCACCGGCTTGCTGCCTGGAACCAAGTA
CATAGTCACCCTGCGCAACGTGAAGAAAGACATTTCCAGCAGCCCTCAGCATCTACTTGCCACCACAGAT
CTTGCTGTGGTGGGCACAGCCTGGGTAAATGAAGAGACTGAGACATCCCTCGATGTGGAGTGGGAGAACC
CTCTGACTGAGGTGGACTATTACAAGCTTCGGTATGGCCCCTTAACAGGGCAGGAGGTGACAGAGGTCAC
TGTGCCCAAGAGCCGTGATCCCAAGAGCAGATATGACATCACTGGTCTGCAGCCTGGAACGGAATATAAA
ATCACAGTTGTGCCCATCCGAGGTGATCTGGAGGGAAAGCCGATTCTCCTGAATGGCAGGACAGAAATTG
ATGGACCAACCAATGTGGTCACAAATCAGGTGACAGAAGACACAGCATCTGTTTCCTGGGATCCAGTGAG
GGCTGACATAGACAAGTATGTGGTGCGCTATATCGCCCCCGATGGGGAGACCAAGGAGAAGGCAGTACCA
AAGGACCAGAGCAGCACCGTTCTCACAGGCCTGAAGCCAGGAGAGGCCTACAAAGTCTTTGTGTGGGCTG
AGAGGGGCAACCAAGGCAGCAAGAAAGCAGACACCAAGGCCCTCACAGAAATTGACAGTCCAGAAAACCT
GGTGACTGACCGGGTGACAGAGAACAGCCTCTCTGTCTCGTGGGACCCAGTGGAGGCTGACATCGACAGG
TATGTGGTAAGCTACACTTCCGTGGATGGAGAGACGAAGCAGGTTCCAGTGAAGAAGGACCAGAGGAGCA
CCGTCCTCACCGGCCTGAGTCCCGGTGTGGAGTACAAAGTTTACGTGTGGGCAGAGAAAGGCGATCGGGA
GAGCAAGAAGGCCAACACCAAGGCTCCCACAGACATCGACAGCCCCAAAAACTTGGTAACTGACCAGGTG
ACAGAGAACACTCTCAGTGTCTCCTGGGACCCTGTTCAGGCCAACATTGACAGGTATATGGTGAGCTACA
CCTCTGCCGATGGAGAGACAAGAGAGGTCCCAGTGCCTAAGGAGAAGAGCAGTACCGTCCTGACTGGCCT
GAGGCCAGGTGTGGAGTACAAGGTCCATGTGTGGGCCCAGAAGGGGACCCAGGAGAGCAGAAAGGCCAAC
ACCAAGGCCCCCACAGATATTGATGGCCCCAAAAACCTGGTGACTGACCAGGTGACCGAGACCACTCTTA
GTGTCTCCTGGGACCCAGTGGAGGCTGACATTGATAGGTACATGGTTCGCTACACGTCTCCTGATGGAGA
GACCAAGGAGGTGCCTGTGTCAAAGGATAAGAGCAGCACAGTCCTGAGGGGCCTGAGGCCAGGTGTGGAG
TACAAGGTGGATGTATGGGCCCAGAAGGGGGCCCAGGACAGCCGGAAGGCCAACACCAAGGCCCCCACAG
ATATTGACAGCCCTAAAAACCTGGTGACTGAGCAGGTGACAGAGAGCACTGCCACCGTGTCCTGGGACCC
AGTAGAGGCTGACATCGACAGGTATGTGGTGCGCTACACTTCTGTCGATGGCGAGACCAGGGAATTTCTC
GTTGGGAAGGACCAAACAAGCACCGTCCTGACAGGCATGAGACCAGGTGTGGAGTATCAGGTCGACGTGT
GGGCCCAGAAGGGGACACAGGAAAGCAGGAAGACCAGCACCAAAGCCCCAACAGATATTGATGGCCCCAA
AAACCTGGTGACTGACCAGGTGACCGAGACCACTCTTAGTGTCTCCTGGGACCCAGTGGAGGCTGACATT
GATAGGTACATGGTTCGCTACACGTCTCCTGATGGAGAGACCAAGGAGGTGCCTGTGTCAAAGGATAAGA
GCAGCACAGTCCTGAGGGGCCTGAGGCCAGGTGTGGAGTACAAGGTGGATGTATGGGCCCAGAAGGGGGC
CCAGGACAGCCGGAAGGCCAACACCAAGGCCCCCACAGATATTGATAGTCCCAAAAACCTGGCGATCGAC
CAGGTGACAGAGACCACTCTCAGTGTCTCCTGGGACCCAGTACAGGCTGACATTGACAGGTATGTGGTGC
GCTACACCTCTGCTGATGGGGAATCCAAAGAATTCCTGATTGGGAAGGAACAGAGGAGCACAGTCCTGAC
AGGCCTGAGGCCAGGTGTGGAGTACAAGGTTGAAGTGTGGGCCCAGAAAGGAGCCCGGGAGAGCAAGAAA
GCCAACACCGAAGGTCACACAGACATTGACAGCCCCAAAAACCTGGTGACCAATCAGGTGACCGAAAATA
CAGCCACCATCTCCTGGGACCCGGTGCAGGCTGATATTGACAGATACATGGTGCGCTACACATCTGCTGA
TGGAGAGACCAGGGAGATTCCAGTGAGGAAGGAGAAGAGCAGCACTGTCCTCACAGGCCTGAGACCGGGT
GTGGAGTACACGGTCCAAGTGTGGGCTCAGAAGGGGGCCCGGGAGAGCAAGAAGGCCAAAACCAAGGCCC
CCACAGAAATTGACAGCCCCAAGAACTTGGTGACCAACCGAGTGACAGAAAATACAGCCACCATCTCCTG
GGACCCAGTGCGAGCCAACATTGACAGGTACATGGTTCGCTACACCTCTGCGGATGGAGAGACTAAGGAG
ATTCCAGTGTCAAAGGATCAGAGTAGCACCATCCTGACAGGCCTGAAACCAGGCATGGAATATACCATTC
ATGTGTGGGCCCAGAAGGGGGCCCGGGAGAGCAAGAAGGCTGATACCAAGGCCCTAACAGAAATTGACCC
TCCCAGAAATCTCCGTCCGTTCGGGGTAACACATTCTGGTGGGGTTTTGACCTGGTTGCCCCCATCTGCT
CAAATTGATGGCTACATTTTGACCTACCAGTTCCCAAATGGCACCGTGAAGGAGGTGGAGCTCCCAAGAG
GCCAGCAGAGATTTGAATTGCAAGACCTGGAACAGGGTGTCACCTATCCTGTTTCCTTGGTTGCCTTCAA
AGGTAATCAGCGGAGCCGGACTGTGTCTACCACCCTTTCTACAGTGGATGCTCGCTTTCCACACCCCTCA
GACTGCAGTCAAGTTCAGCAGAACACCAACGCTGCCAGTGGGCTCTACACCATCTACCTCAATGGTGATG
CCAGCCGGCCCATGCAGGTGTACTGCGACATGGACACTGACGGAGGCGGCTGGATTGTCTTCCAGAGACG
GAACACTGGGCAGCTGGATTTCTTCAAGCGTTGGCGGAGTTATGTAGAAGGTTTTGGGGACCCCATGAAG
GAGTTCTGGCTTGGACTTGATAAACTACATAATCTCACCACTGGCACCACCACTCGGTATGAGGTGAGGG
CAGACTTACAGACTTTCAATGAATCTGCCTACGCTGTATATGATTTCTTCCAAGTGGCATCCAGCAAAGA
GCGGTACAAGCTGTCGGTTGGGAAATACAGAGGCACAGCCGGGGATGCTCTCACCTACCACAATGGATGG
AAGTTCACGACTTTTGACAGAGACAATGATATTGCCCTCAGCAACTGTGCACTGACGCATCATGGTGGCT
GGTGGTATAAGAACTGCCATTTGGCCAACCCGAATGGCAAATATGGGGAGACCAAGCACAGCGAGGGGGT
GAACTGGGAGCCATGGAAGGGACATGAGTTCTCCATTCCTTATGTGGAGCTGAAAATCCGCCCGTTTGGT
TACAGCAGAGACCGTTTCTCTGGCAGAAAGAAGCGCTCCATAGGAAAAGCAAGGATGTTCTGA

Translation (1560 aa):
MGLWGMLAFPLGFLLASVLLVASAPATPESPGCSNKEQQVTVSHTYKIDVPKSALVQVETDPQSLSDDGT
SLLAPGEDGEEQNIIFRHNIRLQTPQKNCDLADSVQDLLARMKKLEEEMAELKEQCNTNRCCQGAADLSR
HCSGHGTFLPETCSCHCDQGWEGADCDQPTCPGACNGHGRCVDGQCVCDAPYVGVDCAYAACPQDCSGHG
VCVQGVCQCHEDFTAEDCSEQRCPGDCSGNGFCDTGECYCEMGFTGPDCSQVVAPQGLQLLKSTENSLLV
SWEPSSEVDYYLLSYYPLGKEQATKQVRVPKEQHTYDITGLLPGTKYIVTLRNVKKDISSSPQHLLATTD
LAVVGTAWVNEETETSLDVEWENPLTEVDYYKLRYGPLTGQEVTEVTVPKSRDPKSRYDITGLQPGTEYK
ITVVPIRGDLEGKPILLNGRTEIDGPTNVVTNQVTEDTASVSWDPVRADIDKYVVRYIAPDGETKEKAVP
KDQSSTVLTGLKPGEAYKVFVWAERGNQGSKKADTKALTEIDSPENLVTDRVTENSLSVSWDPVEADIDR
YVVSYTSVDGETKQVPVKKDQRSTVLTGLSPGVEYKVYVWAEKGDRESKKANTKAPTDIDSPKNLVTDQV
TENTLSVSWDPVQANIDRYMVSYTSADGETREVPVPKEKSSTVLTGLRPGVEYKVHVWAQKGTQESRKAN
TKAPTDIDGPKNLVTDQVTETTLSVSWDPVEADIDRYMVRYTSPDGETKEVPVSKDKSSTVLRGLRPGVE
YKVDVWAQKGAQDSRKANTKAPTDIDSPKNLVTEQVTESTATVSWDPVEADIDRYVVRYTSVDGETREFL
VGKDQTSTVLTGMRPGVEYQVDVWAQKGTQESRKTSTKAPTDIDGPKNLVTDQVTETTLSVSWDPVEADI
DRYMVRYTSPDGETKEVPVSKDKSSTVLRGLRPGVEYKVDVWAQKGAQDSRKANTKAPTDIDSPKNLAID
QVTETTLSVSWDPVQADIDRYVVRYTSADGESKEFLIGKEQRSTVLTGLRPGVEYKVEVWAQKGARESKK
ANTEGHTDIDSPKNLVTNQVTENTATISWDPVQADIDRYMVRYTSADGETREIPVRKEKSSTVLTGLRPG
VEYTVQVWAQKGARESKKAKTKAPTEIDSPKNLVTNRVTENTATISWDPVRANIDRYMVRYTSADGETKE
IPVSKDQSSTILTGLKPGMEYTIHVWAQKGARESKKADTKALTEIDPPRNLRPFGVTHSGGVLTWLPPSA
QIDGYILTYQFPNGTVKEVELPRGQQRFELQDLEQGVTYPVSLVAFKGNQRSRTVSTTLSTVDARFPHPS
DCSQVQQNTNAASGLYTIYLNGDASRPMQVYCDMDTDGGGWIVFQRRNTGQLDFFKRWRSYVEGFGDPMK
EFWLGLDKLHNLTTGTTTRYEVRADLQTFNESAYAVYDFFQVASSKERYKLSVGKYRGTAGDALTYHNGW
KFTTFDRDNDIALSNCALTHHGGWWYKNCHLANPNGKYGETKHSEGVNWEPWKGHEFSIPYVELKIRPFG
YSRDRFSGRKKRSIGKARMF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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