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Report for CCDS15422.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15422.1 Public Mus musculus 1 Myoc 23 108 98 CCDS HistoryNCBI Gene:17926Re-query CCDS DB by CCDS ID:15422.1Re-query CCDS DB by GeneID:17926See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15422.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028020.10 ENSMUSP00000028020.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028020.10Link to Ensembl Protein Viewer:ENSMUSP00000028020.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000028020Re-query CCDS DB by Protein ID:ENSMUSP00000028020
Original member Current member NCBI NM_010865.3 NP_034995.3 Accepted alive Link to Nucleotide Sequence:NM_010865.3Link to Protein Sequence:NP_034995.3Re-query CCDS DB by Nucleotide ID:NM_010865Re-query CCDS DB by Protein ID:NP_034995Link to BLAST:NP_034995.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034995.3 490 O70624 490 100% 0 0

Chromosomal Locations for CCDS 15422.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 162639264 162639825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 162647444 162647569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 162648417 162649201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1473 nt):
ATGCCAGCTCTCCATCTGCTGTTTCTGGCCTGCTTGGTGTGGGGAATGGGGGCCAGGACAGCACAGTTCC
GAAAGGCCAATGATCGGAGTGGCCGATGCCAATACACCTTCACTGTGGCCAGCCCCAATGAATCTAGCTG
CCCAAGGGAGGACCAGGCCATGTCAGCCATCCAAGACCTTCAGAGAGACAGCAGCATCCAGCATGCAGAC
CTAGAGTCCACCAAGGCCCGGGTCAGATCCCTGGAGAGTCTCCTCCACCAGATGACCTTGGGCCGAGTTA
CTGGGACCCAGGAGGCCCAAGAGGGGCTGCAGGGCCAGTTGGGTGCCCTGAGGAGAGAACGGGACCAGCT
GGAGACCCAAACCAGGGATCTGGAGGCAGCCTATAACAATCTCCTTCGAGATAAGTCGGCTTTAGAGGAA
GAGAAGAGGCAGCTGGAACAAGAGAATGAAGATTTGGCCAGGAGGCTAGAAAGCAGCAGCGAGGAGGTAA
CAAGGCTGCGGAGGGGCCAGTGTCCTTCCACCCAGTACCCCTCTCAGGACATGCTGCCAGGCTCCAGGGA
AGTCTCTCAGTGGAATTTGGACACGTTGGCCTTCCAGGAATTGAAGTCAGAGTTAACTGAGGTTCCTGCT
TCCCAAATCTTGAAGGAAAATCCATCTGGCCGACCCAGGAGCAAAGAAGGAGACAAAGGATGTGGAGCGC
TAGTCTGGGTAGGAGAGCCAGTCACCCTGAGGACAGCTGAAACAATCGCTGGCAAGTATGGAGTGTGGAT
GAGAGACCCCAAGCCCACCCACCCCTACACCCAGGAAAGCACATGGAGGATTGACACGGTTGGCACAGAG
ATCCGCCAGGTGTTTGAGTACAGTCAGATAAGCCAGTTCGAGCAGGGCTATCCTTCCAAGGTCCATGTGC
TCCCTCGGGCACTGGAGAGCACGGGTGCTGTGGTGTATGCGGGGAGCCTCTATTTCCAGGGGGCTGAGTC
CAGAACTGTGGTCAGGTATGAGCTAGACACGGAGACCGTGAAGGCAGAGAAGGAAATTCCTGGAGCTGGC
TACCACGGACACTTCCCGTACGCGTGGGGTGGCTACACAGACATTGACTTAGCTGTGGATGAGAGCGGCC
TCTGGGTCATCTACAGCACGGAGGAAGCCAAGGGGGCCATAGTCCTCTCCAAATTGAACCCAGCGAACCT
GGAACTTGAGCGTACCTGGGAGACTAACATCCGTAAGCAGTCTGTGGCCAATGCCTTTGTTATCTGTGGC
ATCTTGTACACGGTGAGCAGCTACTCTTCAGCCCATGCAACCGTCAACTTCGCCTACGACACTAAAACGG
GGACCAGTAAGACCCTGACCATCCCATTCACGAATCGCTACAAGTACAGCAGTATGATTGACTACAACCC
CCTGGAGAGGAAGCTGTTTGCCTGGGACAACTTCAACATGGTCACCTATGATATCAAGCTCTTGGAGATG
TGA

Translation (490 aa):
MPALHLLFLACLVWGMGARTAQFRKANDRSGRCQYTFTVASPNESSCPREDQAMSAIQDLQRDSSIQHAD
LESTKARVRSLESLLHQMTLGRVTGTQEAQEGLQGQLGALRRERDQLETQTRDLEAAYNNLLRDKSALEE
EKRQLEQENEDLARRLESSSEEVTRLRRGQCPSTQYPSQDMLPGSREVSQWNLDTLAFQELKSELTEVPA
SQILKENPSGRPRSKEGDKGCGALVWVGEPVTLRTAETIAGKYGVWMRDPKPTHPYTQESTWRIDTVGTE
IRQVFEYSQISQFEQGYPSKVHVLPRALESTGAVVYAGSLYFQGAESRTVVRYELDTETVKAEKEIPGAG
YHGHFPYAWGGYTDIDLAVDESGLWVIYSTEEAKGAIVLSKLNPANLELERTWETNIRKQSVANAFVICG
ILYTVSSYSSAHATVNFAYDTKTGTSKTLTIPFTNRYKYSSMIDYNPLERKLFAWDNFNMVTYDIKLLEM


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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