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Report for CCDS15430.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15430.1 Public Mus musculus 1 Scyl3 23 108 98 CCDS HistoryNCBI Gene:240880Re-query CCDS DB by CCDS ID:15430.1Re-query CCDS DB by GeneID:240880See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15430.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027876.10 ENSMUSP00000027876.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027876.10Link to Ensembl Protein Viewer:ENSMUSP00000027876.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000027876Re-query CCDS DB by Protein ID:ENSMUSP00000027876
Original member Current member NCBI NM_028776.5 NP_083052.1 Accepted alive Link to Nucleotide Sequence:NM_028776.5Link to Protein Sequence:NP_083052.1Re-query CCDS DB by Nucleotide ID:NM_028776Re-query CCDS DB by Protein ID:NP_083052Link to BLAST:NP_083052.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083052.1 735 Q9DBQ7-1 735 100% 0 0

Chromosomal Locations for CCDS 15430.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 163933529 163933693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163934632 163934817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163936418 163936531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163938740 163938796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163939881 163939983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163941107 163941218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163943824 163943901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163944796 163944935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163946164 163946348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163949142 163949313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163950568 163950726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163951937 163952616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163953382 163953438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2208 nt):
ATGGGATCAGAGAACAGCGCTTTAAAGAGCTACACACTGAGGGAGTCTCCTTTTACCTTACCATCTGGAC
TTGCTGTTTATCCCGCCATATTGCAAGATGGGAAATGTGCTTCCGTGTTTGTATATAAGCGAGAAAATGA
AGACAAGGTTAACAAGGCTGCCAAGCACTTAAAGACACTCCGTCACCCTTGCTTGCTAAGATTTTTATCT
TGTACTGTGGAAGCAGATGGCATTCACCTCGTCACTGAGAGAGTGCAGCCTCTGGAAGTGGCCTTGGAAA
CCCTGTCTCCTGCAGAAGTCTGTGCTGGAATCTATGACATACTGCTGGCTCTTATCTTCCTTCATGACAG
AGGACATTTGACACACAACAATGTCTGCCTGTCGTCTGTTTTTGTGAGTGAGGATGGGCACTGGAAGCTT
GGAGGCATGGAGACTGTTTGCCAAGTTCCTCAGGCCACGCCAGAGTTTCTCAGGAATATCCAGTCAGTAA
GAGACCCAGCATCCATTCCTCCTGAGGAGATGTCTCCAGAATTTTCAGGCCTTCCCGAGTCCCACGGCCA
CGCCCGGGATGCCTATGCCTTTGGAGCTTTGGTGGACAGCTTGCTCCCCATCTTCAATGAGCAGGTTTCA
GCGGACGTTCTCTCCAGCTTCCTACAGATCCTGCACTCAGCTCTGCTGAACCCCATGCCCGAGTGTCGGC
CAGCACTCAGCACCTTACTGTCCCATGATTTCTTCAGAAATGATTTTCTAGAAGTTGTGAACTTCTTGAA
AAGCTTGACATTAAAGAGTGAAGATGAAAAGACTGAATTTTTCAAATTTCTGCTGGACCGAGTGAGCTGC
CTGTCAGAAGAATTAATAGCTTCAAGATTGGTGCCTCTTCTGCTTAACCAGCTGGTGTTTGCTGAGCCAG
TAGCTGTTAAGAGCTTTCTTCCCTATCTACTTGGTCCTAAAAAAGAGAACGCACCAGGAGAAACCCCTTG
CTTGCTCTCGCCAGCGCTGTTCCAGTCCCGAGTGATCCCTGTGCTTCTCCGGCTGTTCGAGGTGCACGAG
GAGCACGTGCGGATGGTGTTACTGTCCCACATCGAGGCCTACGTGGAGCACTTCACTCAGGAACAGCTAA
AGAAAGTCATCCTGCCACAGGTACTACTGGGCCTTCGTGATACCAGCAATTCCATTGTGGCAATTACTCT
CCGTAGCCTGGCAGTGCTGGTGTCTTTACTTGGACCAGAAGTGGTTGTGGGAGGAGAACGAACCAAGATC
TTTAAGCGCACCGCTCCAAGCTTCACCAAAACTAGTGACCTTTCCCCTGAAGGTTCTCCCATGCATGTTG
TCTGCAGCCAGCAGAGTCGGGTCTCAAAAGTCTTGGAGGACCCCTCGTCTAACGTATTCCCTAAATGGTT
GTCTGGCAACGTGCCCAGCAGCAGCAGGAAGCGCATACAGGAAGAATGTTACAGCTCTCTCTCACAGACA
GGTGATCAGTTTTCTCACACCATTAAATTCCCTATGAATGGACTCTCAGATGTGAAAAACACTTCAGAGG
ACAATGGAAGCTTCCCTGCAGGTTCTAATAAGCCCGAGGAGTGGCCTGACTGGAGCGAGCCTGAGGAGCC
TGAGCAGCAGCCTGCCAGTATTCACAGATGGCCCCGAGAACCCTGTGATGTAGCAGAGTCCCAGCACACA
AACCTGACCGCAGAGGAGGTGACCTGGGATGATGGTGAGGCTAGCTTTGGCACTGAAATAAACTCAACAG
CTACAGCCTCTGCTCCTGTGCCTGTTACCTCAGGGGGACAGTCAACCTCTGCAGCTTTGGTTCCTCTCAC
TGAAGAGTCAAAGCCTTTGCAATCCAGTCCTTCCTCAAAGACCAGTCATAGACAGCATGAGGAAGTCAAA
CCACCCCAAGTGTCACAAGAAAGACCCCTGAAGGCTCCGTCAGGACTTGGTTTGGGAGAAGAGTTTACCA
TTCAAGTAAAAAAGAAGCCAGTACAAGACCCGGAGTTGGACTGGTTTGCAGATATGATCCCAGAAATTAA
GCCTTCAGGTACTTTTCTTATTCTGCCTGAACTAAGGACAGAAGTGATGGTCCCTGACAAGGATAACGTC
TCATCACTGATGCAGTTTTCCTCAAAGTTTGCTGCAACAGAAATGACCGAGGGAGAGGCAGAAGGCTGGG
AAGGAGAAGAGCTAGCCTGGGAAGATAACAACTGGTGA

Translation (735 aa):
MGSENSALKSYTLRESPFTLPSGLAVYPAILQDGKCASVFVYKRENEDKVNKAAKHLKTLRHPCLLRFLS
CTVEADGIHLVTERVQPLEVALETLSPAEVCAGIYDILLALIFLHDRGHLTHNNVCLSSVFVSEDGHWKL
GGMETVCQVPQATPEFLRNIQSVRDPASIPPEEMSPEFSGLPESHGHARDAYAFGALVDSLLPIFNEQVS
ADVLSSFLQILHSALLNPMPECRPALSTLLSHDFFRNDFLEVVNFLKSLTLKSEDEKTEFFKFLLDRVSC
LSEELIASRLVPLLLNQLVFAEPVAVKSFLPYLLGPKKENAPGETPCLLSPALFQSRVIPVLLRLFEVHE
EHVRMVLLSHIEAYVEHFTQEQLKKVILPQVLLGLRDTSNSIVAITLRSLAVLVSLLGPEVVVGGERTKI
FKRTAPSFTKTSDLSPEGSPMHVVCSQQSRVSKVLEDPSSNVFPKWLSGNVPSSSRKRIQEECYSSLSQT
GDQFSHTIKFPMNGLSDVKNTSEDNGSFPAGSNKPEEWPDWSEPEEPEQQPASIHRWPREPCDVAESQHT
NLTAEEVTWDDGEASFGTEINSTATASAPVPVTSGGQSTSAALVPLTEESKPLQSSPSSKTSHRQHEEVK
PPQVSQERPLKAPSGLGLGEEFTIQVKKKPVQDPELDWFADMIPEIKPSGTFLILPELRTEVMVPDKDNV
SSLMQFSSKFAATEMTEGEAEGWEGEELAWEDNNW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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