NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS15828.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15828.1 Public Mus musculus 2 Brd3 23 108 98 CCDS HistoryNCBI Gene:67382Re-query CCDS DB by CCDS ID:15828.1Re-query CCDS DB by GeneID:67382See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15828.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028282.14 ENSMUSP00000028282.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028282.14Link to Ensembl Protein Viewer:ENSMUSP00000028282.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000028282Re-query CCDS DB by Protein ID:ENSMUSP00000028282
Original member Current member EBI ENSMUST00000077737.12 ENSMUSP00000076918.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000077737.12Link to Ensembl Protein Viewer:ENSMUSP00000076918.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000077737Re-query CCDS DB by Protein ID:ENSMUSP00000076918
Original member Current member EBI ENSMUST00000164296.7 ENSMUSP00000128812.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164296.7Link to Ensembl Protein Viewer:ENSMUSP00000128812.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164296Re-query CCDS DB by Protein ID:ENSMUSP00000128812
Original member Current member NCBI NM_001113573.1 NP_001107045.1 Accepted alive Link to Nucleotide Sequence:NM_001113573.1Link to Protein Sequence:NP_001107045.1Re-query CCDS DB by Nucleotide ID:NM_001113573Re-query CCDS DB by Protein ID:NP_001107045Link to BLAST:NP_001107045.1
Original member Current member NCBI NM_023336.4 NP_075825.3 Accepted alive Link to Nucleotide Sequence:NM_023336.4Link to Protein Sequence:NP_075825.3Re-query CCDS DB by Nucleotide ID:NM_023336Re-query CCDS DB by Protein ID:NP_075825Link to BLAST:NP_075825.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001107045.1 726 Q8K2F0-1 726 100% 0 0
NP_075825.3 726 Q8K2F0-1 726 100% 0 0

Chromosomal Locations for CCDS 15828.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 27448465 27448580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27449201 27449326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27450257 27450549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27452833 27453074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27454313 27454504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27456909 27457037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27459457 27459828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27461529 27461743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27462421 27462568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27463455 27463592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27463889 27464098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2181 nt):
ATGTCCACTACAGCGGCTGCCCCCACGGGGATCCCGGCAGTCCCGGGCCCCGTGAACCCTCCCCCACCTG
AGGTCTCCAACCCCAGCAAGCCCGGGCGAAAGACTAACCAACTGCAGTACATGCAGAATGTAGTGGTGAA
GACACTCTGGAAACATCAGTTTGCCTGGCCTTTCTACCAGCCTGTGGATGCAATCAAGCTGAACCTGCCT
GATTATCATAAAATAATAAAAAACCCAATGGACATGGGGACTATCAAGAAGAGACTAGAAAATAATTATT
ATTGGAGTGCCAGTGAGTGTATGCAGGACTTCAACACCATGTTTACAAACTGTTATATTTATAATAAGCC
CACAGATGATATAGTGCTAATGGCCCAGGCCTTAGAGAAAATCTTTCTGCAGAAAGTGGCCCAGATGCCT
CAGGAGGAAGTTGAACTATTGCCCCCTGCTCCAAAGGGCAAAGGCCGGAAGCCAGCTGCAGGAGCCCAAA
ATGCAGGTTCCCAACAAGTGGCAGCTGTGTCTTCGGTCTCCCCAGCAACCCCCTTCCAGAACATACCCCC
CACCGTGTCCCAGACACCCGTCATTGCCGCTACCCCTGTACCAACCATCACTGCAAACGTCACGTCAGTT
CCAGTCCCCCCACCCGCTGCACCGCCTCCTCCTGCGACACCCATCGTCCCTGTGGTCCCTCCCACACCGC
CTGTAGTCAAGAAAAAGGGCGTGAAGCGGAAAGCAGACACAACCACACCCACAACATCTGCCATCACTGC
CAGCCGGAGTGAGTCTCCCCCACCACTTTCAGAGCCCAAGCAAGCCAAGGTAGTGGCCCGAAGGGAGAGC
GGGGGCCGCCCCATCAAACCTCCCAAGAAGGACCTGGAAGATGGTGAGGTCCCACAGCACGCGGGTAAAA
AGGGAAAACTGTCCGAGCACCTGCGGCACTGTGACAGCATCCTCCGGGAGATGCTGTCCAAGAAGCATGC
TGCCTATGCGTGGCCCTTTTACAAGCCAGTGGACGCGGAGGCGCTGGAGCTGCATGACTACCATGACATC
ATCAAGCACCCCATGGACCTCAGCACGGTCAAAAGGAAGATGGATAGCCGAGAGTACCCAGATGCACAGG
GCTTTGCTGCTGATATCCGGTTAATGTTCTCGAATTGTTATAAGTACAACCCTCCAGACCACGAAGTGGT
GGCCATGGCCAGGAAGCTCCAGGATGTGTTTGAGATGAGGTTTGCCAAGATGCCCGATGAGCCCATGGAG
GCGCCTGCGCTGCCCGCTCCCACGGCCCCCATCGTGAGCAAGGGGGCTGAGAGCAGCCGCAGTAGTGAGG
AGAGCTCTTCAGATTCAGGCAGCTCAGACTCAGAAGAGGAGCGAGCCACTCGGCTGGCTGAGCTGCAGGA
GCAGCTGAAGGCCGTGCACGAACAGCTGGCTGCCTTGTCTCAGGCCCCAGTGAACAAACCAAAGAAGAAG
AAAGAGAAGAAGGAAAAGGAAAAGAAGAAGAAAGACAAGGACAAAGACAAAGAGAAGGAGAAGCACAAGG
CCAAGTCTGAGGAGGAGAAGAAGGCCAAGGCAGCCCCAGCAGCCAAGCAGGCCCAGCAGAAAAAGGCTCC
CACCAAGAAGGCCAACAGCACAACCACAGCCAGCAGACAGCTCAAGAAGGGCGGCAAGCAGGCATCTGCG
TCCTATGACTCAGAGGAAGAGGAGGAGGGCCTGCCCATGAGCTATGATGAAAAGCGACAACTTAGCCTTG
ACATCAACCGGCTGCCCGGCGAGAAGCTAGGGCGTGTGGTGCACATCATTCAGTCTCGGGAGCCCTCGCT
TCGGGACTCAAACCCAGACGAGATTGAGATTGACTTTGAGACCCTGAAGCCAACCACGCTGCGGGAACTG
GAGAGATATGTCAAGTCTTGTTTACAAAAAAAGCAGAGGAAACCATTGTCAACAAGCGGGAAGAAGCAGG
CAGCCAAATCGAAAGAGGAGCTAGCTCAGGAGAAGAAAAAGGAGCTGGAGAAGCGGCTGCAGGATGTCAG
TGGACAACTGAACAGCAAAAAACCCACTAAGAAAGAGAAGTCCGGCTCAGCTCCCTCAGGAGGCCCATCA
AGGCTCAGCAGTAGCAGCTCCTCTGAGTCTGCGAGCAGTAGCTCCAGTGGATCGAGCTCCGACAGCAGTG
ACTCAGAGTGA

Translation (726 aa):
MSTTAAAPTGIPAVPGPVNPPPPEVSNPSKPGRKTNQLQYMQNVVVKTLWKHQFAWPFYQPVDAIKLNLP
DYHKIIKNPMDMGTIKKRLENNYYWSASECMQDFNTMFTNCYIYNKPTDDIVLMAQALEKIFLQKVAQMP
QEEVELLPPAPKGKGRKPAAGAQNAGSQQVAAVSSVSPATPFQNIPPTVSQTPVIAATPVPTITANVTSV
PVPPPAAPPPPATPIVPVVPPTPPVVKKKGVKRKADTTTPTTSAITASRSESPPPLSEPKQAKVVARRES
GGRPIKPPKKDLEDGEVPQHAGKKGKLSEHLRHCDSILREMLSKKHAAYAWPFYKPVDAEALELHDYHDI
IKHPMDLSTVKRKMDSREYPDAQGFAADIRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPDEPME
APALPAPTAPIVSKGAESSRSSEESSSDSGSSDSEEERATRLAELQEQLKAVHEQLAALSQAPVNKPKKK
KEKKEKEKKKKDKDKDKEKEKHKAKSEEEKKAKAAPAAKQAQQKKAPTKKANSTTTASRQLKKGGKQASA
SYDSEEEEEGLPMSYDEKRQLSLDINRLPGEKLGRVVHIIQSREPSLRDSNPDEIEIDFETLKPTTLREL
ERYVKSCLQKKQRKPLSTSGKKQAAKSKEELAQEKKKELEKRLQDVSGQLNSKKPTKKEKSGSAPSGGPS
RLSSSSSSESASSSSSGSSSDSSDSE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH