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Report for CCDS15938.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15938.1 Public Mus musculus 2 Garnl3 23 108 98 CCDS HistoryNCBI Gene:99326Re-query CCDS DB by CCDS ID:15938.1Re-query CCDS DB by GeneID:99326See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15938.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102810.9 ENSMUSP00000099874.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102810.9Link to Ensembl Protein Viewer:ENSMUSP00000099874.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102810Re-query CCDS DB by Protein ID:ENSMUSP00000099874
Original member Current member NCBI NM_178888.5 NP_849219.2 Accepted alive Link to Nucleotide Sequence:NM_178888.5Link to Protein Sequence:NP_849219.2Re-query CCDS DB by Nucleotide ID:NM_178888Re-query CCDS DB by Protein ID:NP_849219Link to BLAST:NP_849219.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_849219.2 993 Q3V0G7-2 993 100% 0 0

Chromosomal Locations for CCDS 15938.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 32986656 32986830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32989506 32989632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32990564 32990779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32992123 32992261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32995047 32995165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32997656 32997763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 33002779 33002845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 33003784 33003942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 33005049 33005227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 33006798 33006914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 33007249 33007347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 33011400 33011511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 33015186 33015260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 33016685 33016789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 33018501 33018616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 33022662 33022768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 33023489 33023534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 33026080 33026188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 33031070 33031173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 33034031 33034129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 33034710 33034785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 33041443 33041469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 33045488 33045551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 33046584 33046648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 33052096 33052214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 33054158 33054257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 33064004 33064078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 33085875 33085944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 33087082 33087089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2982 nt):
ATGAAAAGCTCTGTCTCAGAAGACCTAGGCTGTAGACGTGGGGATTTCAGTAGGAAGCATTATGGATCTG
TGGAGCTGCTCATCTCTAGTGATGCCGATGGAGCCATCCAAAGGGCAGGAAGATTCCGAGTGGAGAATGG
CTCTACAGATGAGAGTGCAGCTGCTCTGCCAGGCACTTGGCGAAGGACAGACGTGCACTTAGAAAACCCG
GAGTACCACACCCGGTGGTATTTCAAGTACTTTTTAGGACAAGTCCATCAGAATTACATTGGAAATGATG
CAGAGAAGAGCCCCTTCTTCTTGTCTGTCACCCTTTCTGACCAGAATAATCAGCGTGTCCCTCAGTATCG
TGCAATTCTTTGGCGGAAAACAGGTACGCAAAAAATATGTCTCCCCTACAGTCCCACAAAAACGCTGTCT
GTGAAGTCCATCTTAAGTGCCATGAACCTGGACAAGTTTGAGAAAGGACCTAGGGAAATTTTTCATCCCG
AGATACAAAAGGACTTGCTGGTTCTGGAAGAGCAGGAGGGCTCTGTGAATTTCAAATTTGGGGTTCTTTT
TGCCAAAGATGGGCAGCTCACAGATGACGAGATGTTCAGCAATGAAATTGGAAGTGAAGCTTTTCAAAAA
TTTTTAAATCTCCTCGGTGACACCATTACTCTAAAGGGCTGGACAGGCTACCGTGGCGGTCTGGACACCA
AAAATAACACCACAGGGATCAACTCAGTCTATACTGTGTACCAAGGGCATGAGGTCATGTTTCACGTTTC
CACCATGTTGCCATATTCCAAAGAGAACAGACAGCAGGTGGAAAGGAAGCGCCACATTGGAAACGATATT
GTCACCATCGTGTTCCAGGAAGGAGAGGAGTCCTCTCCCGCCTTTAAGCCTTCCATGATCCGCTCCCATT
TTACACATATTTTTGCCTTAGTGAGGTATGACCAGCAAAATGACAATTACAGGCTGAAAATATTTTCAGA
AGAAAGTGTGCCACTTTTTGGCCCACCCTTGCCATCCCCTCCGGTGTTTACTGACCACCAGGAATTCAGG
GACTTTTTGCTTGTGAAATTAATTAACGGTGAAAAAGCCACTTTGGAAACCCCAACTTTTGCCCAGAAAC
GCCGGCGTACTCTGGACATGTTGATCCGCTCCTTATACCAGGATTTGATGCCGGATTTGCATAAGAATAT
GCTCAATCGGCGATCTTTTAGTGATGTTTTACCGGAGTCACCCAAGTCAGCACGGAAAAAAGAGGAGGCC
CGGCAGGCCGAGTTTGTGAGAATAGGGCAGGCCCTGAAGCTCAAGTCCATTGTGAGAGGGGACGCCCCAT
CAAGCTTGGCAGCATCAGGGATGTGTAAAAAAGAGCCTTGGGAGCCCCAGTGTTTCTGCTGTAATTTCCC
TCATGAAGCCGTGTGTGCAGATCCCTGGGGCCAGGCCTTGCTGGTTTCCACGGATGCTGGCGTCTTGCTA
GTGGACGATGACCTCCCATCCGTGCCCGTGTTTGACAGAACTCTACCTGTGAAGCAGATCCACGTGCTGG
AGACCCTGGACCTTCTGGTTCTCAGAGCAGACAAAGGGAAAGACGCCCGCCTCTTTGTCTTCCGGCTCAG
TGCTGTGCAGAAAGGCCTTGATGGCAGGCAGACTGGAAGGAGCAGATCTGACTGCCGAGAAAACAAGCTG
GAGAAAACCAAAGGATGCCACCTGTATGCTATTAATACTCACCACAGCAGAGAGCTGAGAATCGTGGTTG
CAATTCGCAATAAACTGCTTCTCATCACAAGGAAACCACACAACAAGCCAAGTGGGGTGCCAGGTGTCTC
ACTCCTGTCTCCCCTGTCGGAGTCTCCTGTTGAGGAATTCCAGTACATCAGGGAAATCTGCCTGTGTGAC
TCCCCAGCAGTGATGGCCTTAGTGGATGGACCAACGGAAGAGAGCGACAACCTCATCTGTGTGGCATATC
GCCATCAGTTCGACGTGGTAAACGAGAGCACAGGAGAAGCCTTTAGGCTGCACCATGTGGAGGCCAACAA
GGTTAATTTTGTTGCAGCTATTGATGTTTATGAAGATGGAGAAGCCGGCCTGCTCCTGTGCTACAACTAT
AGTTGCATCTATAAAAAGGTTTGCCCCTTTAACGGTGGCTCTTTTTTGCTTCAACCCTCGGCATCGGATT
TCCAGTTCTGTTGGAACCAGGCTCCATATGCAATTGTCTGCGCCTTCCCATACCTCCTGGCCTTTACTAC
CGACTCCATGGAGATCCGCCTGGTGGTGAATGGGAACCTGGTCCACACGGCAGTTGTGCCACAGCTGCAG
CTCGTGGCCTCCAGGTCAGATATATACTTCACAGCAGCCACGACTGTGCATGAAGGCTCATCTGGAGGCA
GCTCAAAGGGAGCCAGTGCCCACACGTCTCCTCAGACACCACCAGCCCGGGACACTCCACTGTTTCCTTC
TTCCCTGGGGGAAGGTGAAATTCAGTCTAAAAATCTGTACAAGATTCCACTTAGAAACCTTGTGGGCAGA
AGCATCGAGCGACCTCTGAAATCACCCTTAGTCTCCAAGGTCATCACCCCGCCCACCTCCATCGGCCTTG
GAGTCGCTGCCATTCCTGTCACGCATTCCTTGTCCCTCTCCCGCATGGAAATTAAAGAGATTGCAAGCAG
GACCCGCAGGGAACTGCTAGGCCTCTCTGATGATGGTGGAACCAAAACAGAGGGAGCACCAAGGGCCAAA
TCAAAAACCCGGAAGCGGTTGGAAGAAAGCCAAGGAGGCCCCAAGCCAGAGACTGTGAGGTCAGCTAGTA
GTGACAGGATCCCATCAGGAATTTTGGAAAGTCCGGCATCAGAAGCCAATCCCGAGGGCCACAACCACTG
GGCAAGTTCTGAGCAGGACGCTGGGGTGGATAAAGAGGGCAGCCCGGGCTCAGGCAGCAGCCCCTTCCAG
CTCATGGCCTCCTCAGAGGAAGACATCATTGACTTGAAATAG

Translation (993 aa):
MKSSVSEDLGCRRGDFSRKHYGSVELLISSDADGAIQRAGRFRVENGSTDESAAALPGTWRRTDVHLENP
EYHTRWYFKYFLGQVHQNYIGNDAEKSPFFLSVTLSDQNNQRVPQYRAILWRKTGTQKICLPYSPTKTLS
VKSILSAMNLDKFEKGPREIFHPEIQKDLLVLEEQEGSVNFKFGVLFAKDGQLTDDEMFSNEIGSEAFQK
FLNLLGDTITLKGWTGYRGGLDTKNNTTGINSVYTVYQGHEVMFHVSTMLPYSKENRQQVERKRHIGNDI
VTIVFQEGEESSPAFKPSMIRSHFTHIFALVRYDQQNDNYRLKIFSEESVPLFGPPLPSPPVFTDHQEFR
DFLLVKLINGEKATLETPTFAQKRRRTLDMLIRSLYQDLMPDLHKNMLNRRSFSDVLPESPKSARKKEEA
RQAEFVRIGQALKLKSIVRGDAPSSLAASGMCKKEPWEPQCFCCNFPHEAVCADPWGQALLVSTDAGVLL
VDDDLPSVPVFDRTLPVKQIHVLETLDLLVLRADKGKDARLFVFRLSAVQKGLDGRQTGRSRSDCRENKL
EKTKGCHLYAINTHHSRELRIVVAIRNKLLLITRKPHNKPSGVPGVSLLSPLSESPVEEFQYIREICLCD
SPAVMALVDGPTEESDNLICVAYRHQFDVVNESTGEAFRLHHVEANKVNFVAAIDVYEDGEAGLLLCYNY
SCIYKKVCPFNGGSFLLQPSASDFQFCWNQAPYAIVCAFPYLLAFTTDSMEIRLVVNGNLVHTAVVPQLQ
LVASRSDIYFTAATTVHEGSSGGSSKGASAHTSPQTPPARDTPLFPSSLGEGEIQSKNLYKIPLRNLVGR
SIERPLKSPLVSKVITPPTSIGLGVAAIPVTHSLSLSRMEIKEIASRTRRELLGLSDDGGTKTEGAPRAK
SKTRKRLEESQGGPKPETVRSASSDRIPSGILESPASEANPEGHNHWASSEQDAGVDKEGSPGSGSSPFQ
LMASSEEDIIDLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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