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Report for CCDS16009.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16009.1 Public Mus musculus 2 Nek6 23 108 98 CCDS HistoryNCBI Gene:59126Re-query CCDS DB by CCDS ID:16009.1Re-query CCDS DB by GeneID:59126See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16009.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054234.9 ENSMUSP00000049723.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054234.9Link to Ensembl Protein Viewer:ENSMUSP00000049723.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000054234Re-query CCDS DB by Protein ID:ENSMUSP00000049723
Original member Current member EBI ENSMUST00000112895.7 ENSMUSP00000108516.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112895.7Link to Ensembl Protein Viewer:ENSMUSP00000108516.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112895Re-query CCDS DB by Protein ID:ENSMUSP00000108516
Original member Current member NCBI NM_001159631.1 NP_001153103.1 Accepted alive Link to Nucleotide Sequence:NM_001159631.1Link to Protein Sequence:NP_001153103.1Re-query CCDS DB by Nucleotide ID:NM_001159631Re-query CCDS DB by Protein ID:NP_001153103Link to BLAST:NP_001153103.1
Original member Current member NCBI NM_021606.3 NP_067619.1 Accepted alive Link to Nucleotide Sequence:NM_021606.3Link to Protein Sequence:NP_067619.1Re-query CCDS DB by Nucleotide ID:NM_021606Re-query CCDS DB by Protein ID:NP_067619Link to BLAST:NP_067619.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153103.1 313 Q9ES70 313 100% 0 0
NP_067619.1 313 Q9ES70 313 100% 0 0

Chromosomal Locations for CCDS 16009.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 38550582 38550671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38557816 38557956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38558853 38558915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38560881 38560991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38568847 38568955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38569628 38569735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38577239 38577333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38582383 38582496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38585280 38585390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (942 nt):
ATGGCAGGACAGCCCAGCCACATGCCTCATGGAGGGAGCCCAAACCACCTCTGCCATGCACTGGGGCCTG
CACCCCCTCCAGACCCACAGAGGCTCCCAAACACCCTGTCTTTTCGCTGCTCACTGGCAGACTTCCAAAT
TGAGAAGAAGATTGGCCGAGGACAGTTCAGTGAGGTTTACAAGGCCACTTGCCTGCTGGACAGGAAGACA
GTGGCTCTGAAGAAGGTGCAGATCTTTGAGATGATGGATGCCAAAGCCAGGCAAGACTGTGTCAAGGAAA
TTGGTCTCCTAAAGCAACTGAACCATCCGAATATCATCAAGTATCTGGACTCCTTCATCGAAGACAATGA
GCTGAACATTGTGCTGGAGTTGGCTGACGCGGGTGACCTCTCACAGATGATCAAGTATTTCAAGAAGCAG
AAGCGGCTTATCCCTGAGAGGACCGTGTGGAAGTACTTCGTGCAGCTGTGCAGCGCTGTGGAGCACATGC
ACTCCCGACGTGTGATGCACCGAGACATCAAGCCCGCCAACGTGTTCATCACAGCTACGGGCATTGTGAA
GCTTGGTGACCTCGGCCTGGGCCGCTTCTTCAGCTCGGAGACCACTGCGGCCCACTCACTAGTGGGAACA
CCATACTACATGTCACCCGAGAGAATCCATGAGAATGGCTACAACTTCAAGTCAGACATCTGGTCCCTAG
GCTGCCTGCTGTATGAGATGGCAGCTCTCCAGAGCCCCTTCTATGGAGATAAGATGAATCTCTTCTCCCT
CTGCCAAAAGATTGAGCAGTGTGACTACCCGCCTCTCCCGGGAGAGCACTACTCTGAGAAGCTTCGGGAA
CTGGTCAGTATGTGTATCTACCCTGACCCTGACCACCGACCTGACATTGTATATGTGCACCAGGTGGCTA
GACAGATGCACGTCTGGACATCCAGCACCTGA

Translation (313 aa):
MAGQPSHMPHGGSPNHLCHALGPAPPPDPQRLPNTLSFRCSLADFQIEKKIGRGQFSEVYKATCLLDRKT
VALKKVQIFEMMDAKARQDCVKEIGLLKQLNHPNIIKYLDSFIEDNELNIVLELADAGDLSQMIKYFKKQ
KRLIPERTVWKYFVQLCSAVEHMHSRRVMHRDIKPANVFITATGIVKLGDLGLGRFFSSETTAAHSLVGT
PYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLFSLCQKIEQCDYPPLPGEHYSEKLRE
LVSMCIYPDPDHRPDIVYVHQVARQMHVWTSST


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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