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Report for CCDS16023.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16023.1 Public Mus musculus 2 Epc2 23 108 98 CCDS HistoryNCBI Gene:227867Re-query CCDS DB by CCDS ID:16023.1Re-query CCDS DB by GeneID:227867See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16023.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000092123.10 ENSMUSP00000089758.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000092123.10Link to Ensembl Protein Viewer:ENSMUSP00000089758.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000092123Re-query CCDS DB by Protein ID:ENSMUSP00000089758
Original member Current member NCBI NM_172663.4 NP_766251.3 Accepted alive Link to Nucleotide Sequence:NM_172663.4Link to Protein Sequence:NP_766251.3Re-query CCDS DB by Nucleotide ID:NM_172663Re-query CCDS DB by Protein ID:NP_766251Link to BLAST:NP_766251.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766251.3 808 Q8C0I4 808 100% 0 0

Chromosomal Locations for CCDS 16023.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 49451806 49451958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 49488689 49488848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 49513215 49513360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 49522471 49522677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 49528848 49528996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 49530011 49530143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 49532044 49532235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 49535255 49535344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 49536576 49536724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 49536825 49537168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 49545709 49545845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 49547446 49547605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 49548431 49548764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 49549926 49549998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2427 nt):
ATGAGTAAACTCTCCTTCCGAGCGCGGGCGCTGGACGCCGCCAAACCGCTGCCCATCTACCGCGGCAAGG
ACATGCCTGATCTCAACGACTGCGTCTCCATCAACCGGGCCGTGCCCCAGATGCCCACCGGGATGGAGAA
GGAGGAGGAATCGGAACATCACCTACAGCGAGCTATTTCAGCGCAGCAAGTATTTAGAGAAAAAAAAGAG
AGCATGGTCATTCCAGTTCCTGAGGCAGAGAGCAACGTCAACTATTACAATCGCTTGTACAAAGGGGAGT
TCAAACAGCCCAAGCAGTTCATTCATATTCAGCCTTTTAACCTAGACAACGAGCAACCAGATTATGATAT
GGATTCAGAAGATGAGACATTATTAAATAGACTTAACAGAAAAATGGAAATTAAACCTTTGCAATTTGAA
ATTATGATTGACAGACTTGAAAAAGCCAGTTCTAACCAGCTTGTAACACTTCAAGAAGCAAAACTGCTGC
TAAATGAAGATGATTATCTTATTAAAGCTGTATATGACTACTGGGTGAGAAAACGAAAGAACTGCAGGGG
GCCATCCCTCATTCCCCAGATTAAGCAAGAGAAAAGAGATGGCTCTACCAACAATGATCCTTACGTTGCC
TTTCGGAGGAGAACAGAGAAAATGCAGACTCGGAAGAACCGTAAGAATGATGAAGCTTCTTATGAAAAGA
TGCTGAAGCTGAGGCGGGAGTTCAGCAGAGCCATAACAATTTTGGAAATGATTAAGAGAAGAGAAAAAAC
CAAACGGGAATTATTGCACTTAACACTGGAAGTTGTGGAAAAAAGATATCATTTGGGAGACTATGGGGGT
GAAATCCTTAATGAAGTGAAAGTTAATAGATCAGAAAAAGAGTTATATGCCAGTCCAGCAACCCTTCATA
ATGGAAATCATCACAAAGTTCAAGAATGTAAAACTAAGCACCCTCATCATTTGTCTTTGAAAGAAGAGGC
TTCTGATGTGGTTCGTCAAAAGAAGAAGTACCCAAAGAAGCCTAAGGCAGAGGCTGGGATAGCCCCTCAG
CAGCCCACTCCTGAGACATTGCCTGTGATCAATAAGAGTGACATTAAGCAATATGACTTTCAGAGCTCAG
ACGAAGATGAATTTCCACAGGTGCTGTCTCCAGCTTCAGAGGCTGAGGAGGAGAATGACCCTGACGGTTC
CTGTGCTTTCAGAAGACGGGCAGGATGCCAGTATTACGCTCCGCGTTTGGACCAAGCTAATAACCATATG
TGTGAAAATTCAGAGTTGGCAGACTTGGATAAGTTGAGGTATAAGCATTGTCTTACGACACTTACAGTTC
CAAGAAGATGTATAGGATTTGCAAGGAGGCGAATTGGCAGAGGTGGCAGGGTCATAATGGACCGAATATC
CACAGAACATGACCCCGTCCTGAAACAGATAGACCCTGAGATGCTGAACGGGTTTTCAAGCTCTTCCCAA
ACTATAGACTTTTCTTCTAATTTCTCTCGGACCAATGCTTCCAGTAAACCTTGTGAAAATAGACTGTCTC
TTTCTGAAATATTAAGCAATATCAGATCATGTCGACTACAGTGTTTCCAGCCAAGGCTACTAAATGTACA
GGACATTGATAGTGAAGAATGTACCTCAAGAAAACCAGGGCAGACTGTGAGCAGTAAAAGAGTTTCTGCA
GCATCCGTAGCTTTATTGAACACCAGCAAGAACGGCATATCAGTAACAGGGGGCATCACAGAAGAGCAGT
TTCAGACACATCAACAGCAGCTAGTTCAAATGCAAAGGCAGCAACTTGCGCAGCTTCATCAGAAACAACA
ATCCCAGCATTCCTCACAGCAGACACATCCAAAAGCACAGGGCTCAAGCACCTCTGACTGTATGTCTAAA
ACACTTGACTCAGCCAGCGCCCACTTTGCTGCATCTGCAGTGGTCAGTGCTCCTGTTCCAAGTCGCAGTG
AGGGATCCAAGGAACAGAACACTGGCCACAACAATATGAATGGTGTTGTCCAGCCTTCAGGACCCTCTAA
AACATTATATTCCACCAATATGGCTTTATCATCCAGCCCAGGGATTTCAGCTGTACAGCTTGTAAGGACA
GTTGGCCACACTACTACAAACCACTTGATCCCAGCGTTGTGCACAAGCAGTCCTCAGACACTTCCCATGA
ACAATTCCTGCCTGACCAATGCAGTGCACCTCAATAACGTCAGTGTTGTTTCTCCTGTCAATGTGCATAT
CAATACACGGACTTCAGCACCATCGCCAACAGCCTTAAAACTTGCCACAGTTGCTGCCAGCATGGACAGA
GTGCCAAAGGTTACTCCCAGCAGTGCCATCAGCAGCATAGCCAGAGAGAACCATGAACCAGAAAGACTGG
GTTTAAATGGACTAGCAGAGACAACAGTAGCTATGGAGGTGACATAA

Translation (808 aa):
MSKLSFRARALDAAKPLPIYRGKDMPDLNDCVSINRAVPQMPTGMEKEEESEHHLQRAISAQQVFREKKE
SMVIPVPEAESNVNYYNRLYKGEFKQPKQFIHIQPFNLDNEQPDYDMDSEDETLLNRLNRKMEIKPLQFE
IMIDRLEKASSNQLVTLQEAKLLLNEDDYLIKAVYDYWVRKRKNCRGPSLIPQIKQEKRDGSTNNDPYVA
FRRRTEKMQTRKNRKNDEASYEKMLKLRREFSRAITILEMIKRREKTKRELLHLTLEVVEKRYHLGDYGG
EILNEVKVNRSEKELYASPATLHNGNHHKVQECKTKHPHHLSLKEEASDVVRQKKKYPKKPKAEAGIAPQ
QPTPETLPVINKSDIKQYDFQSSDEDEFPQVLSPASEAEEENDPDGSCAFRRRAGCQYYAPRLDQANNHM
CENSELADLDKLRYKHCLTTLTVPRRCIGFARRRIGRGGRVIMDRISTEHDPVLKQIDPEMLNGFSSSSQ
TIDFSSNFSRTNASSKPCENRLSLSEILSNIRSCRLQCFQPRLLNVQDIDSEECTSRKPGQTVSSKRVSA
ASVALLNTSKNGISVTGGITEEQFQTHQQQLVQMQRQQLAQLHQKQQSQHSSQQTHPKAQGSSTSDCMSK
TLDSASAHFAASAVVSAPVPSRSEGSKEQNTGHNNMNGVVQPSGPSKTLYSTNMALSSSPGISAVQLVRT
VGHTTTNHLIPALCTSSPQTLPMNNSCLTNAVHLNNVSVVSPVNVHINTRTSAPSPTALKLATVAASMDR
VPKVTPSSAISSIARENHEPERLGLNGLAETTVAMEVT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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