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Report for CCDS16185.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16185.1 Public Mus musculus 2 Tfpi 23 108 98 CCDS HistoryNCBI Gene:21788Re-query CCDS DB by CCDS ID:16185.1Re-query CCDS DB by GeneID:21788See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16185.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028487.9 ENSMUSP00000028487.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028487.9Link to Ensembl Protein Viewer:ENSMUSP00000028487.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000028487Re-query CCDS DB by Protein ID:ENSMUSP00000028487
Original member Current member EBI ENSMUST00000111718.7 ENSMUSP00000107347.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111718.7Link to Ensembl Protein Viewer:ENSMUSP00000107347.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111718Re-query CCDS DB by Protein ID:ENSMUSP00000107347
Original member Current member NCBI NM_001355271.1 NP_001342200.1 Accepted alive Link to Nucleotide Sequence:NM_001355271.1Link to Protein Sequence:NP_001342200.1Re-query CCDS DB by Nucleotide ID:NM_001355271Re-query CCDS DB by Protein ID:NP_001342200Link to BLAST:NP_001342200.1
Original member Current member NCBI NM_001355273.1 NP_001342202.1 Accepted alive Link to Nucleotide Sequence:NM_001355273.1Link to Protein Sequence:NP_001342202.1Re-query CCDS DB by Nucleotide ID:NM_001355273Re-query CCDS DB by Protein ID:NP_001342202Link to BLAST:NP_001342202.1
Original member Current member NCBI NM_011576.1 NP_035706.1 Accepted alive Link to Nucleotide Sequence:NM_011576.1Link to Protein Sequence:NP_035706.1Re-query CCDS DB by Nucleotide ID:NM_011576Re-query CCDS DB by Protein ID:NP_035706Link to BLAST:NP_035706.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001342200.1 306 O54819-1 306 100% 0 0
NP_001342202.1 306 O54819-1 306 100% 0 0
NP_035706.1 306 O54819-1 306 100% 0 0

Chromosomal Locations for CCDS 16185.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 84433096 84433184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84434242 84434421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84444010 84444138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84444740 84444916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84452557 84452595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84453800 84453997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84458023 84458131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (921 nt):
ATGACTTACAAAATGAAGAAAGAATATGCCTTTTGGGCCACTGTGTGTCTGTTGCTTAGCCTTGTTCCCG
AGTTTCTTAATGCTCTGTCTGAGGAAGCTGATGACACAGATTCTGAGCTGGGGTCAATGAAACCGCTACA
TACATTTTGTGCAATGAAGGCAGATGATGGTCCATGCAAAGCAATGATAAGGAGTTATTTTTTCAATATG
TATACTCATCAATGTGAAGAATTTATATACGGGGGATGTGAAGGGAACGAGAACCGATTTGATACCCTGG
AAGAGTGTAAGAAAACATGCATACCAGGTTATGAGAAGACAGCTGTGAAGGCAGCATCTGGAGCAGAAAG
GCCAGATTTCTGCTTCTTGGAAGAGGACCCTGGACTCTGCCGAGGTTACATGAAGAGGTATCTTTATAAC
AACCAGACAAAGCAGTGTGAACGATTCGTGTACGGTGGCTGCCTGGGCAACCGCAACAACTTTGAAACTT
TGGATGAGTGCAAGAAGATCTGTGAGAATCCAGTCCACTCCCCTTCCCCAGTGAATGAGGTACAGATGAG
TGACTACGTAACTGATGGAAATACTGTAACTGATCGCAGTACTGTAAATAACATCGTGGTTCCCCAGTCT
CCCAAAGTGCCCAGGCGTCGGGATTATCGTGGCCGTCCCTGGTGTCTTCAACCAGCAGACAGTGGATTAT
GTAAAGCCAGTGAGAGAAGATTCTACTACAATTCAGCCACTGGGAAATGCCACCGATTTAACTACACTGG
ATGTGGGGGAAATAATAATAATTTTACTACCAGAAGGAGATGTCTGAGATCATGTAAAACAGGTCTCATC
AAAAACAAGTCAAAAGGAGTAGTTAAGATTCAGAGAAGAAAGGCGCCCTTCGTGAAAGTTGTATATGAAA
GCATTAATTAG

Translation (306 aa):
MTYKMKKEYAFWATVCLLLSLVPEFLNALSEEADDTDSELGSMKPLHTFCAMKADDGPCKAMIRSYFFNM
YTHQCEEFIYGGCEGNENRFDTLEECKKTCIPGYEKTAVKAASGAERPDFCFLEEDPGLCRGYMKRYLYN
NQTKQCERFVYGGCLGNRNNFETLDECKKICENPVHSPSPVNEVQMSDYVTDGNTVTDRSTVNNIVVPQS
PKVPRRRDYRGRPWCLQPADSGLCKASERRFYYNSATGKCHRFNYTGCGGNNNNFTTRRRCLRSCKTGLI
KNKSKGVVKIQRRKAPFVKVVYESIN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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