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Report for CCDS16434.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16434.1 Public Mus musculus 2 F2 23 108 98 CCDS HistoryNCBI Gene:14061Re-query CCDS DB by CCDS ID:16434.1Re-query CCDS DB by GeneID:14061See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 16434.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028681.14 ENSMUSP00000028681.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028681.14Link to Ensembl Protein Viewer:ENSMUSP00000028681.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000028681Re-query CCDS DB by Protein ID:ENSMUSP00000028681
Original member NCBI NM_010168.3 NP_034298.1 Updated not alive Link to Nucleotide Sequence:NM_010168.3Link to Protein Sequence:NP_034298.1Re-query CCDS DB by Nucleotide ID:NM_010168Re-query CCDS DB by Protein ID:NP_034298
Current member NCBI NM_010168.4 NP_034298.1 Accepted alive Link to Nucleotide Sequence:NM_010168.4Link to Protein Sequence:NP_034298.1Re-query CCDS DB by Nucleotide ID:NM_010168Re-query CCDS DB by Protein ID:NP_034298Link to BLAST:NP_034298.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034298.1 618 P19221 618 100% 0 0

Chromosomal Locations for CCDS 16434.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 91625433 91625573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91625702 91625772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91628322 91628503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91628660 91628833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91629151 91629318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91629950 91630076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91630153 91630266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91630509 91630826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91632976 91633112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91633191 91633296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91634899 91634949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91635171 91635195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91635778 91635941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91636318 91636396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1857 nt):
ATGTCGCACGTCCGCGGCCTGGGCCTCCCTGGCTGCTTGGCTCTGGCTGCCCTGGTTAGCCTGGTACACA
GCCAGCATGTGTTCCTGGCGCCTCAGCAAGCACTATCGCTGCTCCAGCGGGTCCGCAGAGCCAACAGTGG
CTTCCTGGAGGAGCTCCGAAAGGGCAACCTAGAGCGTGAGTGCGTGGAAGAGCAGTGCAGCTATGAGGAG
GCCTTTGAGGCCCTGGAGTCTCCCCAAGACACAGACGTGTTCTGGGCCAAGTACACAGTGTGTGATTCAG
TGAGGAAACCTCGAGAGACTTTCATGGACTGTCTGGAAGGTCGCTGTGCTATGGATCTGGGTGTGAACTA
CCTTGGGACTGTGAATGTCACCCATACCGGTATCCAGTGCCAGCTGTGGCGGAGCCGCTACCCCCACAAG
CCTGAAATCAACTCCACCACCCATCCTGGGGCAGACCTGAAGGAGAACTTCTGCCGCAATCCAGACAGCA
GTACCACGGGACCCTGGTGCTACACCACAGATCCTACTGTGCGCAGAGAGGAATGCAGTGTCCCTGTCTG
TGGCCAGGAGGGCCGTACCACTGTGGTGATGACTCCTCGCTCTGGAGGTTCCAAGGACAATCTGTCACCT
CCACTGGGACAGTGCCTCACTGAGCGTGGCCGACTATACCAGGGGAATTTGGCTGTGACAACACTTGGGT
CCCCCTGCCTGCCCTGGAACAGCTTACCAGCCAAGACCCTGAGCAAGTACCAAGACTTCGACCCCGAGGT
GAAACTCGTGGAAAACTTCTGCCGCAACCCAGACTGGGATGAGGAGGGCGCATGGTGCTATGTTGCGGGG
CAGCCTGGCGACTTTGAATACTGCAACCTCAACTACTGCGAGGAGGCGGTGGGAGAGGAGAACTATGATG
TGGACGAGTCCATCGCGGGACGCACCACCGATGCGGAGTTCCACACCTTCTTCAATGAGAAGACCTTCGG
CCTTGGGGAGGCAGACTGTGGCCTGCGGCCTTTGTTCGAGAAGAAGTCGTTGAAAGACACAACCGAAAAG
GAGCTTCTTGACTCTTACATAGACGGGCGCATCGTGGAGGGCTGGGACGCTGAGAAGGGTATCGCCCCCT
GGCAGGTGATGCTTTTTCGGAAGAGTCCCCAAGAGCTGCTGTGTGGGGCCAGCCTTATCAGTGACCGATG
GGTCCTCACTGCTGCCCACTGCATTCTGTACCCACCCTGGGACAAGAACTTCACTGAGAATGACCTCCTG
GTGCGCATTGGCAAGCATTCCCGAACCAGATATGAGCGGAATGTTGAAAAGATCTCCATGCTGGAAAAGA
TCTACGTCCACCCCAGATATAACTGGCGGGAGAACCTAGACCGCGATATCGCTCTGCTCAAGCTAAAGAA
ACCTGTACCCTTCAGTGACTATATTCACCCCGTGTGTTTGCCAGACAAGCAGACAGTAACCAGCTTGCTC
CGGGCTGGTTATAAAGGGCGGGTGACAGGCTGGGGCAACCTTCGGGAGACATGGACAACCAACATCAATG
AGATACAGCCCAGCGTCCTGCAGGTGGTGAACCTGCCCATTGTAGAGCGGCCAGTGTGCAAGGCCTCCAC
CCGGATTCGAATTACTGACAACATGTTCTGTGCTGGCTTCAAGGTGAATGACACCAAGCGAGGAGATGCT
TGTGAAGGTGACAGTGGAGGACCTTTTGTCATGAAGAGCCCCTTTAACAACCGCTGGTATCAAATGGGTA
TTGTCTCATGGGGTGAAGGATGTGACCGGAAGGGGAAATACGGCTTCTACACGCATGTGTTCCGTCTGAA
AAGGTGGATACAGAAAGTCATTGATCAATTTGGATAG

Translation (618 aa):
MSHVRGLGLPGCLALAALVSLVHSQHVFLAPQQALSLLQRVRRANSGFLEELRKGNLERECVEEQCSYEE
AFEALESPQDTDVFWAKYTVCDSVRKPRETFMDCLEGRCAMDLGVNYLGTVNVTHTGIQCQLWRSRYPHK
PEINSTTHPGADLKENFCRNPDSSTTGPWCYTTDPTVRREECSVPVCGQEGRTTVVMTPRSGGSKDNLSP
PLGQCLTERGRLYQGNLAVTTLGSPCLPWNSLPAKTLSKYQDFDPEVKLVENFCRNPDWDEEGAWCYVAG
QPGDFEYCNLNYCEEAVGEENYDVDESIAGRTTDAEFHTFFNEKTFGLGEADCGLRPLFEKKSLKDTTEK
ELLDSYIDGRIVEGWDAEKGIAPWQVMLFRKSPQELLCGASLISDRWVLTAAHCILYPPWDKNFTENDLL
VRIGKHSRTRYERNVEKISMLEKIYVHPRYNWRENLDRDIALLKLKKPVPFSDYIHPVCLPDKQTVTSLL
RAGYKGRVTGWGNLRETWTTNINEIQPSVLQVVNLPIVERPVCKASTRIRITDNMFCAGFKVNDTKRGDA
CEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRKGKYGFYTHVFRLKRWIQKVIDQFG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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