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Report for CCDS16481.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
16481.1 |
Public |
Mus musculus |
2 |
Caprin1 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:53872](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:16481.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:53872](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 2 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 16481.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000028607.12 |
ENSMUSP00000028607.6 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000028607.12](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000028607.6](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000028607](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000028607](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000111147.7 |
ENSMUSP00000106777.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000111147.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000106777.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000111147](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000106777](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
|
NCBI |
NM_001111289.1 |
NP_001104759.1 |
Updated |
not alive |
![Link to Nucleotide Sequence:NM_001111289.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001104759.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001111289](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001104759](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
|
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001111289.2 |
NP_001104759.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001111289.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001104759.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001111289](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001104759](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001104759.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
|
NCBI |
NM_016739.3 |
NP_058019.2 |
Updated |
not alive |
![Link to Nucleotide Sequence:NM_016739.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_058019.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_016739](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_058019](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
|
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_016739.4 |
NP_058019.2 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_016739.4](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_058019.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_016739](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_058019](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_058019.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 16481.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (2124 nt): ATGCCCTCGGCCACCAGCCACAGCGGAAGCGGCAGCAAATCGTCGGGACCGCCGCCGCCGTCCGGTTCCT CCGGGAGTGAGGCGGCGGCCGGGGCAGCTGCGCCGGCTTCTCAGCATCCGGCAACCGGCACCGGCGCCGT CCAGACCGAGGCCATGAAGCAGATTCTCGGCGTAATCGACAAGAAACTTCGGAACCTGGAGAAGAAAAAG GGTAAACTTGATGATTACCAGGAACGAATGAATAAAGGGGAAAGGCTCAATCAAGACCAGCTGGATGCCG TATCTAAGTACCAGGAAGTCACAAATAATTTGGAGTTTGCAAAGGAATTACAGAGGAGTTTCATGGCATT AAGTCAAGATATTCAGAAAACAATAAAGAAGACAGCACGTCGGGAACAGCTTATGAGAGAAGAAGCAGAA CAGAAGCGCTTAAAAACTGTACTTGAGTTACAGTATGTATTGGATAAGCTGGGAGATGATGATGTGAGAA CAGATCTGAAACAAGGTTTGAGTGGAGTGCCAATATTGTCTGAGGAGGAGTTGTCATTGCTGGATGAGTT CTACAAGCTCGTAGATCCTGAGCGTGACATGAGTTTAAGGTTAAATGAGCAGTATGAACATGCCTCAATT CACTTGTGGGATTTGCTGGAAGGGAAAGAAAAGCCTGTGTGTGGAACAACCTATAAAGCTCTAAAGGAAA TTGTTGAGCGTGTTTTCCAGTCAAACTACTTTGATAGCACTCACAATCATCAAAATGGGTTGTGTGAGGA GGAAGAGGCGGCTTCAGCGCCCACAGTGGAGGACCAGGTAGCTGAAGCTGAACCTGAGCCAGCGGAAGAA TACACAGAGCAAAGTGAGGTTGAATCAACAGAGTATGTCAATAGGCAGTTCATGGCAGAAACACAGTTCA GCAGTGGTGAGAAGGAGCAAGTGGATGAGTGGACAGTTGAAACAGTTGAGGTTGTAAACTCACTCCAGCA GCAACCTCAGGCTGCGTCCCCTTCAGTCCCAGAGCCCCACTCTTTGACTCCAGTGGCTCAGTCAGATCCA CTTGTGAGAAGGCAGCGTGTACAAGATCTTATGGCACAAATGCAAGGGCCCTATAATTTCATACAGGATT CAATGTTGGATTTTGAAAATCAGACGCTTGATCCTGCCATTGTATCCGCACAGCCTATGAACCCTACCCA GAACATGGATATGCCTCAGCTGGTTTGCCCTCAGGTTCATTCTGAATCTAGACTTGCCCAATCTAATCAA GTTCCTGTACAACCAGAAGCCACACAGGTTCCTTTGGTTTCATCCACAAGTGAGGGGTATACAGCATCTC AGCCCTTGTACCAGCCATCTCATGCTACGGAGCAGCGGCCGCAGAAAGAGCCAATGGATCAGATTCAGGC AACAATATCTTTGAATACAGACCAGACTACAGCATCCTCATCCCTTCCTGCTGCTTCTCAGCCTCAAGTG TTCCAGGCTGGGACAAGTAAACCTTTGCACAGCAGTGGAATCAATGTAAATGCAGCTCCATTCCAGTCCA TGCAAACGGTGTTCAATATGAATGCTCCAGTCCCTCCTGCTAATGAACCAGAAACGTTAAAACAACAGAG TCAGTACCAGGCCACTTATAACCAGAGTTTTTCCAGTCAGCCTCACCAAGTGGAACAAACAGAGCTTCAA CAAGACCAACTGCAAACGGTGGTTGGCACTTACCATGGATCCCAGGACCAGCCTCATCAAGTGCCTGGTA ACCACCAGCAACCCCCACAGCAGAACACTGGCTTTCCACGTAGCAGTCAGCCTTATTACAACAGTCGTGG GGTATCTCGAGGAGGGTCTCGTGGTGCCAGAGGCTTGATGAATGGATACAGGGGCCCTGCCAATGGATTT AGAGGAGGATATGATGGTTACCGCCCTTCATTCTCGAACACTCCAAACAGTGGTTATTCACAGTCTCAGT TCACTGCTCCCCGGGACTACTCTGGTTACCAGCGGGATGGATATCAGCAGAATTTCAAGCGAGGCTCTGG GCAGAGTGGACCACGGGGAGCCCCACGAGGTCGTGGAGGGCCCCCAAGACCCAACAGAGGGATGCCGCAA ATGAACACTCAGCAAGTGAATTAA
Translation (707 aa): MPSATSHSGSGSKSSGPPPPSGSSGSEAAAGAAAPASQHPATGTGAVQTEAMKQILGVIDKKLRNLEKKK GKLDDYQERMNKGERLNQDQLDAVSKYQEVTNNLEFAKELQRSFMALSQDIQKTIKKTARREQLMREEAE QKRLKTVLELQYVLDKLGDDDVRTDLKQGLSGVPILSEEELSLLDEFYKLVDPERDMSLRLNEQYEHASI HLWDLLEGKEKPVCGTTYKALKEIVERVFQSNYFDSTHNHQNGLCEEEEAASAPTVEDQVAEAEPEPAEE YTEQSEVESTEYVNRQFMAETQFSSGEKEQVDEWTVETVEVVNSLQQQPQAASPSVPEPHSLTPVAQSDP LVRRQRVQDLMAQMQGPYNFIQDSMLDFENQTLDPAIVSAQPMNPTQNMDMPQLVCPQVHSESRLAQSNQ VPVQPEATQVPLVSSTSEGYTASQPLYQPSHATEQRPQKEPMDQIQATISLNTDQTTASSSLPAASQPQV FQAGTSKPLHSSGINVNAAPFQSMQTVFNMNAPVPPANEPETLKQQSQYQATYNQSFSSQPHQVEQTELQ QDQLQTVVGTYHGSQDQPHQVPGNHQQPPQQNTGFPRSSQPYYNSRGVSRGGSRGARGLMNGYRGPANGF RGGYDGYRPSFSNTPNSGYSQSQFTAPRDYSGYQRDGYQQNFKRGSGQSGPRGAPRGRGGPPRPNRGMPQ MNTQQVN
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