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Report for CCDS16485.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16485.1 Public Mus musculus 2 Fbxo3 23 108 98 CCDS HistoryNCBI Gene:57443Re-query CCDS DB by CCDS ID:16485.1Re-query CCDS DB by GeneID:57443See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16485.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102565.3 ENSMUSP00000099625.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102565.3Link to Ensembl Protein Viewer:ENSMUSP00000099625.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102565Re-query CCDS DB by Protein ID:ENSMUSP00000099625
Original member Current member NCBI NM_020593.2 NP_065618.1 Accepted alive Link to Nucleotide Sequence:NM_020593.2Link to Protein Sequence:NP_065618.1Re-query CCDS DB by Nucleotide ID:NM_020593Re-query CCDS DB by Protein ID:NP_065618Link to BLAST:NP_065618.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065618.1 415 Q9DC63-2 415 100% 0 0

Chromosomal Locations for CCDS 16485.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 104027863 104027966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104030344 104030433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104033596 104033759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104042904 104043018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104045658 104045862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104047934 104047979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104050271 104050355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104051134 104051256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104053365 104053480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104054836 104055035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1248 nt):
ATGGCTGCCGTAGAGGCCGAGACGGGGCTGCTGACCCTGGAGTCGCTGCCCACCGACCCTCTGCTGCTCA
TCTTATCCTTCGTGGACTACAGGGACCTAATCAATTGTTGCTATGTTAGTCGAAGACTTAGCCAGCTTTC
AACTCATGATCCACTGTGGAGAAGACATTGCAAAAAATACTGGCTGATATCTGAGGAAGAAAAAGCCGGG
AAGAGTCAGTGCTGGAGATCCCTCTTCATAGAGACCTACTCAGACGTGGGGAGGTACATCGACCATTACG
CCGCCATTAAAAAGGCCTGGCGTGACCTCAAGAAGTACTTGGAGCCCAGGTGTCCTCGGATGGTTTTATC
TCTGAAAGAGGGCGCACGTGAGGAAGACCTGGATGCTGTCGAAGCTCAGATCGGTTGCAAGCTCCCGGAT
GATTATCGCTGTTCATACCGGATCCACAACGGGCAAAAGTTAGTGGTGCCGGGGTTGCTGGGAAGTATGG
CACTGTCCAATCACTACCGCTCTGAAGATCTACTAGATGTTGATACTGCTGCAGGAGGATTTCAGCAGAG
ACAGGGACTGAAATACTGTCTCCCTTTAACCTTTTGCATACACACCGGCTTGAGTCAGTACATAGCTGTG
GAGGCTGCAGAGGGGCGGAATAAGAACGAAGTGTTCTACCAATGTCCAGACCAAATGGCTCGGAATCCTG
CTGCTATTGACATGTTTATCATAGGTGCTACTTTTACCGACTGGTTTACATCCTATGTCAACAATGTTGT
ATCAGGTGGTTTCCCCATCATCAGAGACCAGATTTTCAGATATATTCATGATCCAGAATGTGTGGCAACA
ACTGGAGATATTACAGTTTCAGTGTCCACATCGTTTCTGCCAGAACTCAGCTCTGTGCATCCGCCACACT
ATTTCTTCACATACCGAATCAGGATTGAAATGTCAAGGGATGCTCTTCCTGAGAAGGCCTGTCAGTTGGA
CAGTCGCTACTGGAGGATAACAAACGCTAAAGGGGATGTGGAAGAAGTCCAGGGACCTGGAGTAGTCGGT
GAATTTCCAATTATTAGCCCAGGTCGGATATATGAATACACAAGCTGTACCACATTTTCTACAACATCAG
GCTACATGGAAGGGTATTACACCTTCCATTTTCTGTACTTTAAGGACAAGGTCTTTAATGTTGCCATCCC
CCGATTCCACATGGCATGTCCAACATTCAGGGTGTCTATAGCTCGATTGGTAAGTTAA

Translation (415 aa):
MAAVEAETGLLTLESLPTDPLLLILSFVDYRDLINCCYVSRRLSQLSTHDPLWRRHCKKYWLISEEEKAG
KSQCWRSLFIETYSDVGRYIDHYAAIKKAWRDLKKYLEPRCPRMVLSLKEGAREEDLDAVEAQIGCKLPD
DYRCSYRIHNGQKLVVPGLLGSMALSNHYRSEDLLDVDTAAGGFQQRQGLKYCLPLTFCIHTGLSQYIAV
EAAEGRNKNEVFYQCPDQMARNPAAIDMFIIGATFTDWFTSYVNNVVSGGFPIIRDQIFRYIHDPECVAT
TGDITVSVSTSFLPELSSVHPPHYFFTYRIRIEMSRDALPEKACQLDSRYWRITNAKGDVEEVQGPGVVG
EFPIISPGRIYEYTSCTTFSTTSGYMEGYYTFHFLYFKDKVFNVAIPRFHMACPTFRVSIARLVS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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