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Report for CCDS16578.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16578.1 Public Mus musculus 2 Bmf 23 108 98 CCDS HistoryNCBI Gene:171543Re-query CCDS DB by CCDS ID:16578.1Re-query CCDS DB by GeneID:171543See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16578.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000090219.12 ENSMUSP00000087686.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090219.12Link to Ensembl Protein Viewer:ENSMUSP00000087686.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000090219Re-query CCDS DB by Protein ID:ENSMUSP00000087686
Original member NCBI NM_138313.4 NP_612186.2 Updated not alive Link to Nucleotide Sequence:NM_138313.4Link to Protein Sequence:NP_612186.2Re-query CCDS DB by Nucleotide ID:NM_138313Re-query CCDS DB by Protein ID:NP_612186
Current member NCBI NM_138313.5 NP_612186.2 Accepted alive Link to Nucleotide Sequence:NM_138313.5Link to Protein Sequence:NP_612186.2Re-query CCDS DB by Nucleotide ID:NM_138313Re-query CCDS DB by Protein ID:NP_612186Link to BLAST:NP_612186.2

Chromosomal Locations for CCDS 16578.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 118532558 118532659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118545082 118545245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118546716 118547012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118549041 118549170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118549540 118549662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (816 nt):
ATGCCCGGAGCGGGCGTATTTTGGAAACAATACCGCGCGGTGTGCCGTGGCCTCCTCCCGCGCCAGCTCG
CGCCTGCAGCAGTCGCTGCCGCAGCCCGCGCCACCGCCTCCCACCGCAGCCCGCTGGAGTTTGCCCCCTT
CTTCCCAATCGAGTGTGGGCACCAAGCCCCCCGAGTGTTCTTCACCCTGGACCCTGGCGCAGAGCCCTGG
CATCACAACTCGGAGGCTGAGACGCTGTCCTGGAGTCACCCAGGAGAGATGGAGCCACCTCAGTGTGTGG
AGGAGCTAGAAGATGATGTGTTCCAGTCAGAGGATGGGGAGCCAGGGACACAGCCTGGGGGCTTGCTCTC
TGCTGACCTGTTTGCCCAGAGCCAGCTGGACTGTCCCCTCAGTCGACTCCAGCTCTTCCCTCTCACCCAT
TGCTGTGGTCCCGGACTCCGGCCCATAAGCCAGGAAGACAAGGCCACTCAGACCCTCAGTCCAGCTTCCC
CAAGCCAGGGTGTCATGCTGCCTTGTGGGGTGACAGAGGAACCCCAGAGACTCTTTTACGGCAACGCTGG
CTACAGGCTTCCTCTCCCTGCCAGTTTCCCTGCAGGCTCACCCCTTGGGGAGCAGCCCCCTGAAGGACAG
TTCCTTCAGCACCGAGCAGAGGTGCAGATCGCCAGAAAGCTTCAGTGTATTGCAGACCAGTTCCATCGGC
TTCATACGCAACAACACCAGCAGAACCGAGACCGTGCGTGGTGGCAGGTCTTCCTTTTCCTTCAAAACCT
CGCCCTGAACAGACAAGAAAACAGGGAAGGGGTGGGGCCCTGGTGA

Translation (271 aa):
MPGAGVFWKQYRAVCRGLLPRQLAPAAVAAAARATASHRSPLEFAPFFPIECGHQAPRVFFTLDPGAEPW
HHNSEAETLSWSHPGEMEPPQCVEELEDDVFQSEDGEPGTQPGGLLSADLFAQSQLDCPLSRLQLFPLTH
CCGPGLRPISQEDKATQTLSPASPSQGVMLPCGVTEEPQRLFYGNAGYRLPLPASFPAGSPLGEQPPEGQ
FLQHRAEVQIARKLQCIADQFHRLHTQQHQQNRDRAWWQVFLFLQNLALNRQENREGVGPW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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