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Report for CCDS16598.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16598.1 Public Mus musculus 2 Rhov 23 108 98 CCDS HistoryNCBI Gene:228543Re-query CCDS DB by CCDS ID:16598.1Re-query CCDS DB by GeneID:228543See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16598.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037360.7 ENSMUSP00000041411.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037360.7Link to Ensembl Protein Viewer:ENSMUSP00000041411.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000037360Re-query CCDS DB by Protein ID:ENSMUSP00000041411
Original member Current member NCBI NM_145530.2 NP_663505.1 Accepted alive Link to Nucleotide Sequence:NM_145530.2Link to Protein Sequence:NP_663505.1Re-query CCDS DB by Nucleotide ID:NM_145530Re-query CCDS DB by Protein ID:NP_663505Link to BLAST:NP_663505.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663505.1 236 Q8VDU1 236 100% 0 0

Chromosomal Locations for CCDS 16598.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 119270044 119270487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119270682 119270740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119270916 119271123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (711 nt):
ATGCCGCCGCGGGAGCTAAGCGAGGCCGAGCCACCGCCTCTCCCGGCCTCGACCCCTCCTCCGCGGCGGC
GCAGCGCCCCTCCGGAGCTGGGCATCAAATGCGTGCTGGTGGGCGATGGCGCGGTGGGCAAGAGCAGCCT
CATCGTCAGCTACACCTGCAATGGGTACCCCGCGCGCTATCGGCCTACAGCACTAGACACCTTCTCCGTG
CAAGTCCTGGTCGATGGAGCCCCTGTGCGAATCGAGCTTTGGGACACCGCAGGGCAGGAGGACTTTGACC
GGCTTCGTTCTCTCTGCTACCCGGACACCGATGTCTTTCTGGCTTGCTTCAGCGTGGTGCAGCCCAGCTC
CTTCCAAAACATAACAGAAAAATGGCTGCCTGAGATCCGCACTCACAACCCCCAAGCACCCGTGTTGCTG
GTGGGCACTCAGGCTGACCTAAGGGACGATGTCAATGTACTAATTCAGTTGGACCAAGGAGGCCGGGAGG
GCCCAGTACCACAACCCCAAGCCCAGGGTCTGGCTGAGAAGATCCGCGCCTGCTGCTACCTTGAGTGCTC
GGCCTTGACGCAGAAGAACTTGAAGGAGGTGTTCGACTCGGCCATTCTCAGTGCGATTGAGCACAAAGCC
CGTCTGGAGAAGAAACTGAACGCAAAAGGTGTGCGCACGCTGTCTCGCTGTCGCTGGAAGAAGTTCTTCT
GCTTTGTGTGA

Translation (236 aa):
MPPRELSEAEPPPLPASTPPPRRRSAPPELGIKCVLVGDGAVGKSSLIVSYTCNGYPARYRPTALDTFSV
QVLVDGAPVRIELWDTAGQEDFDRLRSLCYPDTDVFLACFSVVQPSSFQNITEKWLPEIRTHNPQAPVLL
VGTQADLRDDVNVLIQLDQGGREGPVPQPQAQGLAEKIRACCYLECSALTQKNLKEVFDSAILSAIEHKA
RLEKKLNAKGVRTLSRCRWKKFFCFV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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