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Report for CCDS16599.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16599.1 Public Mus musculus 2 Vps18 23 108 98 CCDS HistoryNCBI Gene:228545Re-query CCDS DB by CCDS ID:16599.1Re-query CCDS DB by GeneID:228545See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16599.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037280.4 ENSMUSP00000036915.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037280.4Link to Ensembl Protein Viewer:ENSMUSP00000036915.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000037280Re-query CCDS DB by Protein ID:ENSMUSP00000036915
Original member Current member NCBI NM_172269.3 NP_758473.3 Accepted alive Link to Nucleotide Sequence:NM_172269.3Link to Protein Sequence:NP_758473.3Re-query CCDS DB by Nucleotide ID:NM_172269Re-query CCDS DB by Protein ID:NP_758473Link to BLAST:NP_758473.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_758473.3 973 Q8R307 973 100% 0 0

Chromosomal Locations for CCDS 16599.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 119289040 119289130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119290153 119290294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119292698 119292789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119292919 119294789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119296894 119297619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2922 nt):
ATGGCGTCCATCCTGGATGAGTACGAGGACTCATTGTCCCGCTCGGCCGTCTTGCAGACTGGTTGCCCTA
GCGTGGGCATCCCCCATTCTGGGTATGTAAGTGCCCACCTGGAGAAGGAGGTGCCCATCTTCACCAAGCA
GCGGGTTGACTTCACCCCCTCGGAGCGGATCACTAGCCTCGTGGTCTCCTGCAATCAGCTCTGCATGAGC
CTGGGCAAGGATACACTGCTCCGCATTGACTTGGGCAAGGCAAGTGAGCCCAACCGTGTGGAACTGGGGC
GCAAGGACGACGCCAAAGTCCACAAGATGTTCCTGGACCATACTGGCTCTCATCTGCTGGTTGCGCTGAG
TAGCACCGAGGTCCTTTACATGAACCGCAATGGACAGAAGGCCCGGCCCCTGGCTCGCTGGAAGGGACAG
CTGGTGGAGAGTGTGGGATGGAACAAGGCCATGGGCAACGAGAGCAGCACCGGCCCCATCCTGGTCGGCA
CAGCTCAAGGACAGATCTTTGAAGCAGAGCTCTCAGCTAGCGAGGGTGGCCTCTTTGGCCCTGCCCCAGA
TCTCTACTTCCGTCCACTGTATGTGTTAAATGAAGAAGGGGGTCCAGCCCCTGTGTGCTCCCTCGAGGCT
GAGCGTGGCCCCGATGGCCGAGGCTTTGTCATTGCCACCACTCGGCAGCGCCTCTTCCAGTTCATAGGCC
GAGCTGTGGAAGATACTGAAGCCCAGGGCTTCGCAGGACTCTTTGCTGCCTATACAGACCACCCGCCCCC
ATTCCGTGAGTTTCCTAGCAATTTGGGGTATAGTGAGTTGGCTTTCTATACCCCTAAGTTACGCTCGGCA
CCTCGCGCCTTTGCCTGGATGATGGGAGATGGAGTGCTGTATGGCTCACTGGACTGCGGGCGTCCTGACT
CGCTGCTGAGTGAGGAGCGAGTGTGGGAATACCCAGCGGGGGTTGGTCCTGGGGCCAATCCACCCTTAGC
CATCGTCCTGACCCAGTTCCATTTCCTACTGCTGCTGGCCGACCGGGTGGAGGCTGTGTGCACGCTAACA
GGGCAGGTGGTGCTACGGGATCACTTCCTGGAGAAGTTTGGACCACTGAGGCACATGGTGAAGGACTCAT
CCACAGGCCACCTATGGGCCTACACTGAGCGTGCGGTCTTCCGCTACCATGTGCAACGTGAGGCACGGGA
TGTCTGGCGCACCTACTTGGACATGAACCGCTTTGACCTGGCCAAAGAGTATTGTAGAGAGCGGCCTGAT
TGCCTGGACACGGTCCTGGCCCGAGAGGCTGATTTCTGTTTTCGTCAGCATCGCTACCTGGAGAGCGCCC
GCTGCTACGCGCTGACCCAGAGCTATTTTGAGGAGATTGCCCTCAAGTTCTTGGAGGCCCGGCAAGAGGA
GGCGCTGGCCGAGTTTCTTCAGCGGAAACTGGCCGGCTTGAAGCCGACGGAGCGTACCCAGGCCACACTG
CTGACCACTTGGCTGACAGAGCTCTACCTGAGCCGCCTGGGTGCTCTGCAGGGTGACCCAGATGCTCTGA
CTCTCTACCGGGACACACGGGAGTGTTTCCGTACTTTTCTCAGTAGCCCTCGGCACAAAGAGTGGCTCTT
TGCCAGCCGGGCCTCTATCCACGAGCTGCTCGCCAGTCACGGAGACACAGAGCACATGGTGTATTTTGCA
GTGATCATGCAGGACTATGAACGGGTGGTCGCATACCACTGCCAGCATGAGGCTTACGAGGAGGCCCTGG
CTGTGCTTGCCCGCCACCGGGACCCCCAGCTCTTCTACAAATTCTCCCCCATTCTCATCCGCCACATCCC
CCGCCAGCTCGTAGACGCCTGGATTGAGATGGGCAGCCGGCTGGATGCTCGGCAGCTCATCCCTGCCCTG
GTGAACTACAGCCAGGGCGGTGAGGCCCAGCAGGTGAGCCAGGCCATCCGCTACATGGAATTCTGCGTGA
ATGTGCTCGGTGAGACGGAGCAGGCCATTCACAACTACCTGCTGTCCCTGTATGCCCGTGGCCAGCCAGC
CTCACTTCTGGCATACCTGGAACAAGCTGGGGCCAGCCCGCACCGTGTACATTATGATCTCAAATATGCA
CTTCGACTTTGTGCTGAGCACGGCCACCACCGCGCCTGCGTCCATGTCTATAAGGTGTTGGAGCTATATG
AGGAGGCTGTGGACCTGGCCCTGCAGGTGGATGTGGACCTGGCCAAGCAGTGTGCAGACTTGCCGGAGGA
GGATGAGGAACTTCGCAAGAAACTATGGCTCAAGATCGCCCGGCACGTGGTGCAGGAGGAAGAAGACGTC
CAGACAGCCATGGCCTGCTTGGCCAGCTGCCCCTTGCTCAAGATCGAGGATGTGCTGCCCTTCTTCCCTG
ACTTTGTCACCATCGACCACTTCAAGGAGGCAATCTGTAGTTCCCTGAAGGCCTACAACCACCACATCCA
GGAGCTGCAGCGCGAGATGGAAGAAGCCACAGCCAGTGCCCAGCGCATCCGACGAGACTTGCAGGAGCTC
CGAGGCCGCTATGGCACCGTGGAGCCCCAGGACAAATGCTCCACCTGTGACTTTCCTTTGCTCAACCGAC
CCTTTTACCTGTTTCTCTGTGGCCACATGTTTCACGCTGACTGTCTCCTACAGGCTGTGCGGCCCGGCCT
CCCTGCCTACAAGCAGGCCAGACTTGAGGAACTGCAGCGCAAGCTTGGGGCGGCGCCTCCTCCGACCAAA
GGCTCCGTGAAGGCCAAGGAGGCAGAAGCTGGGGCTGCAGCGGTGGGGCCCAGTCGGGAGCAGCTCAAGG
CTGACCTGGATGAGCTGGTGGCTGCTGAGTGTGTGTACTGTGGGGAGCTGATGATTCGGTCTATCGACCG
GCCCTTCATTGATCCGCAGCGCTATGAGGAGGAGCACCTCAGCTGGCTATAG

Translation (973 aa):
MASILDEYEDSLSRSAVLQTGCPSVGIPHSGYVSAHLEKEVPIFTKQRVDFTPSERITSLVVSCNQLCMS
LGKDTLLRIDLGKASEPNRVELGRKDDAKVHKMFLDHTGSHLLVALSSTEVLYMNRNGQKARPLARWKGQ
LVESVGWNKAMGNESSTGPILVGTAQGQIFEAELSASEGGLFGPAPDLYFRPLYVLNEEGGPAPVCSLEA
ERGPDGRGFVIATTRQRLFQFIGRAVEDTEAQGFAGLFAAYTDHPPPFREFPSNLGYSELAFYTPKLRSA
PRAFAWMMGDGVLYGSLDCGRPDSLLSEERVWEYPAGVGPGANPPLAIVLTQFHFLLLLADRVEAVCTLT
GQVVLRDHFLEKFGPLRHMVKDSSTGHLWAYTERAVFRYHVQREARDVWRTYLDMNRFDLAKEYCRERPD
CLDTVLAREADFCFRQHRYLESARCYALTQSYFEEIALKFLEARQEEALAEFLQRKLAGLKPTERTQATL
LTTWLTELYLSRLGALQGDPDALTLYRDTRECFRTFLSSPRHKEWLFASRASIHELLASHGDTEHMVYFA
VIMQDYERVVAYHCQHEAYEEALAVLARHRDPQLFYKFSPILIRHIPRQLVDAWIEMGSRLDARQLIPAL
VNYSQGGEAQQVSQAIRYMEFCVNVLGETEQAIHNYLLSLYARGQPASLLAYLEQAGASPHRVHYDLKYA
LRLCAEHGHHRACVHVYKVLELYEEAVDLALQVDVDLAKQCADLPEEDEELRKKLWLKIARHVVQEEEDV
QTAMACLASCPLLKIEDVLPFFPDFVTIDHFKEAICSSLKAYNHHIQELQREMEEATASAQRIRRDLQEL
RGRYGTVEPQDKCSTCDFPLLNRPFYLFLCGHMFHADCLLQAVRPGLPAYKQARLEELQRKLGAAPPPTK
GSVKAKEAEAGAAAVGPSREQLKADLDELVAAECVYCGELMIRSIDRPFIDPQRYEEEHLSWL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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