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Report for CCDS16641.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16641.1 Public Mus musculus 2 Strc 23 108 98 CCDS HistoryNCBI Gene:140476Re-query CCDS DB by CCDS ID:16641.1Re-query CCDS DB by GeneID:140476See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16641.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038389.14 ENSMUSP00000039378.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038389.14Link to Ensembl Protein Viewer:ENSMUSP00000039378.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000038389Re-query CCDS DB by Protein ID:ENSMUSP00000039378
Original member Current member NCBI NM_080459.2 NP_536707.2 Accepted alive Link to Nucleotide Sequence:NM_080459.2Link to Protein Sequence:NP_536707.2Re-query CCDS DB by Nucleotide ID:NM_080459Re-query CCDS DB by Protein ID:NP_536707Link to BLAST:NP_536707.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_536707.2 1809 Q8VIM6 1809 100% 0 0

Chromosomal Locations for CCDS 16641.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 121363976 121364064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121364273 121364420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121364512 121364609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121364706 121364854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121365021 121365163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121365743 121365898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121366598 121366767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121367598 121367754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121368089 121368179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121368336 121368532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121368925 121369060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121370717 121370829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121370939 121371062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121371727 121371785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121372083 121372202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121372661 121372726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121372919 121373086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121373261 121373299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121373550 121373732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121374279 121374411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121374658 121374773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121374873 121375059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121375199 121375365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121375509 121375619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121375719 121375781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121376642 121378019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121378886 121378910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121378997 121379782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121380805 121380862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5430 nt):
ATGGCTCTGAGCCTCCAGCCCCAGCTGCTCCTTCTCCTGTCGCTCCTGCCGCAGGAAGTGACTTCAGCCC
CTACTGGGCCTCAGTCTTTGGATGCTGGTCTCTCCCTTCTGAAGTCATTCGTAGCCACTCTGGACCAAGC
TCCTCAGCGTTCCCTCAGCCAGTCACGGTTCTCTGCGTTCCTGGCCAACATTTCTTCATCCTTCCAGCTT
GGGAGGATGGGGGAGGGACCGGTGGGAGAGCCCCCACCTCTCCAGCCCCCTGCACTTCGACTTCATGATT
TCCTCGTGACACTGAGAGGTAGCCCAGACTGGGAGCCAATGCTAGGGCTTCTGGGAGATGTGCTGGCACT
CCTGGGACAGGAACAGACTCCCCGGGACTTTTTGGTGCACCAGGCAGGTGTACTGGGTGGACTTGTAGAG
GCATTGTTGGGAGCGTTAGTTCCTGGAGGCCCCCCTGCCCCCACTCGACCCCCATGCACCCGTGATGGCC
CTTCTGACTGTGTCCTGGCTGCTGATTGGTTGCCTTCTCTGATGTTGTTATTAGAGGGTACACGCTGGCA
GGCCCTGGTGCAGTTGCAGCCCAGTGTGGACCCAACCAATGCCACAGGTCTTGATGGTAGAGAGCCAGCT
CCTCACTTTTTACAGGGTCTGCTGGGCTTGCTTACCCCAGCAGGAGAGTTGGGCTCTGAGGAGGCTCTTT
GGGGTGGTCTGCTGCGCACAGTGGGGGCCCCCCTCTATGCTGCCTTCCAGGAGGGGCTACTGCGAGTCAC
TCATTCTCTGCAAGATGAGGTCTTTTCTATTATGGGACAGCCAGAGCCTGATGCCAGTGGGCAGTGCCAG
GGAGGCAACCTTCAACAGCTGCTTTTATGGGGCATGCGGAACAACCTTTCTTGGGACGCCCGAGCACTGG
GTTTTCTATCTGGATCACCACCTCCACCCCCTGCTCTCCTGCACTGCCTGAGCAGAGGTGTGCCTCTGCC
CAGGGCTTCCCAGCCTGCGGCTCACATCAGCCCTCGACAGCGGCGAGCCATCTCTGTGGAGGCCCTCTGC
GAGAACCACTCAGGCCCAGAGCCACCCTACAGCATCTCCAACTTCTCCATCTACTTGCTCTGCCAGCACA
TCAAGCCTGCCACCCCGCGGCCCCCTCCTACCACCCCACGGCCTCCTCCTACCACCCCACAGCCCCCTCC
TACCACTACACAGCCCATTCCTGACACTACACAGCCCCCTCCTGTCACCCCAAGGCCTCCTCCTACCACC
CCACAACCCCCTCCTAGCACAGCTGTCATCTGCCAGACAGCTGTATGGTACGCAGTCTCGTGGGCACCAG
GTGCCCGAGGTTGGCTCCAAGCCTGCCATGATCAGTTTCCTGATCAATTTCTGGATATGATCTGCGGCAA
CCTCTCATTTTCAGCCCTGTCTGGCCCCAGTCGTCCTTTGGTAAAGCAGCTCTGTGCTGGCTTGCTCCCA
CCCCCCACTAGCTGTCCACCAGGCCTGATCCCTGTGCCCCTCACCCCAGAAATATTCTGGGGCTGTTTCC
TGGAGAATGAGACACTGTGGGCTGAACGGTTGTGTGTGGAGGACAGTCTGCAGGCTGTGCCCCCGAGGAA
CCAGGCTTGGGTTCAGCATGTGTGTCGGGGCCCCACCTTGGACGCCACTGATTTTCCACCGTGCCGCGTT
GGACCCTGTGGGGAACGCTGCCCAGATGGGGGCAGCTTCCTGCTCATGGTCTGTGCCAATGACACTCTGT
ATGAAGCCTTGGTTCCCTTCTGGGCTTGGCTAGCAGGCCAATGCAGAATTAGTCGTGGAGGAAATGATAC
TTGCTTTCTAGAAGGCATGCTGGGCCCCTTGTTGCCCTCTCTGCCCCCTCTGGGACCATCCCCACTCTGT
CTGGCTCCTGGTCCTTTTCTGCTTGGCATGTTATCCCAGTTGCCACGCTGTCAGTCCTCCGTGCCAGCCC
TCGCCCACCCCACGCGCCTACATTACCTCCTGCGCCTACTGACCTTCCTTCTGGGTCCAGGGACTGGGGG
TGCCGAGACGCAGGGGATGTTAGGTCAAGCCCTGCTGCTCTCTAGTCTCCCAGACAACTGTTCATTCTGG
GATGCCTTCCGCCCAGAGGGCCGGAGAAGTGTACTGAGGACAGTCGGAGAGTACTTGCAGCGGGAAGAGC
CAACCCCACCAGGCTTAGACTCCTCCCTCAGCCTCGGCTCTGGTATGAGCAAGATGGAGCTTCTGTCCTG
CTTCAGTCCTGTACTGTGGGATCTACTCCAGAGAGAGAAGAGCGTTTGGGCCCTGAGGACCCTGGTGAAG
GCCTACCTGCGCATGCCTCCAGAAGACCTTCAGCAGCTTGTGCTTTCAGCAGAGATGGAGGCTGCACAGG
GCTTCCTGACGCTCATGCTTCGTTCCTGGGCTAAGCTGAAGGTTCAACCATCCGAGGAGCAGGCCATGGG
CCGCCTGACAGCCTTGCTGCTCCAGCGGTACCCACGCCTCACCTCCCAACTCTTTATCGACATGTCACCG
CTCATCCCCTTCCTGGCTGTCCCTGACCTCATGCGCTTCCCACCGTCCCTTTTGGCCAACGACAGTGTCC
TGGCTGCCATCAGGGATCACAGCTCAGGAATGAAGCCTGAACAGAAGGAGGCCCTGGCAAAACGACTGCT
GGCCCCTGAGCTGTTTGGAGAAGTGCCTGATTGGCCCCAGGAGCTGCTGTGGGCAGCCCTGCCTCTGCTT
CCCCATCTGCCTCTGGAGAGCTTTCTCCAGCTCAGCCCTCACCAGATCCAGGCCCTGGAGGATAGCTGGC
CAGTAGCAGATCTTGGGCCGGGACACGCCCGACATGTGCTTCGTAGCCTAGTAAACCAGAGCATGGAGGA
TGGGGAGGAGCAGGTGCTCAGGCTTGGGTCCCTCGCCTGTTTCCTGAGTCCTGAGGAGCTACAGAGTCTG
GTGCCCTTGAGTGATCCAATGGGGCCTGTAGAACAGGGTCTGCTGGAATGTGCGGCCAATGGGACCCTCA
GCCCAGAAGGACGGGTGGCATATGAACTTCTGGGAGTGTTGCGTTCATCTGGAGGAACTGTCTTAAGCCC
CCGAGAGCTGAGGGTCTGGGCACCTCTCTTTCCCCAGCTGGGCCTCCGCTTCCTGCAGGAGCTCTCAGAG
ACCCAGCTTAGAGCCATGCTTCCTGCCCTACAGGGAGCCAGTGTCACACCTGCCCAGGCTGTTCTGTTGT
TTGGAAGGCTCCTTCCTAAGCATGATCTGTCCCTGGAGGAACTCTGCTCCCTGCACCCTCTCCTGCCAGG
TCTCAGCCCCCAGACACTCCAGGCCATCCCTAAGAGAGTTCTGGTTGGTGCTTGTTCCTGCCTGGGCCCT
GAACTGTCAAGGCTTTCAGCTTGCCAGATTGCAGCTCTGCTGCAGACCTTTCGGGTAAAAGATGGTGTTA
AAAATATGGGTGCAGCAGGTGCCGGCTCAGCCGTGTGCATTCCTGGGCAGCCCACCACTTGGCCAGACTG
CCTGCTTCCCCTGCTCCCATTAAAGCTGCTACAGCTGGACGCTGCAGCTCTTCTGGCAAACCGAAGACTC
TATCGGCAGCTGCCTTGGTCTGAGCAACAGGCACAGTTTCTCTGGAAGAAAATGCAAGTGCCTACCAACC
TGAGCCTGAGGAATCTGCAGGCTCTGGGCAACTTGGCAGGAGGCATGACCTGCGAGTTTCTGCAGCAGAT
CAGCTCAATGGTTGACTTTCTTGATGTGGTACACATGCTCTACCAGCTGCCCACTGGTGTTCGAGAGAGC
CTGCGGGCCTGTATCTGGACAGAGCTACAGCGGAGGATGACAATGCCAGAGCCAGAGCTGACCACCCTAG
GGCCAGAACTGAGTGAACTTGACACAAAGCTACTCCTGGACTTGCCGATCCAGCTGATGGACAGATTGTC
CAATGATTCCATTATGTTGGTGGTGGAGATGGTCCAAGGCGCTCCAGAGCAGCTGCTGGCACTGACCCCA
CTCCACCAGACAGCCTTGGCAGAGCGAGCACTTAAAAACCTGGCTCCAAAGGAGACCCCAATCTCCAAAG
AAGTGCTGGAGACACTGGGCCCCTTGGTTGGATTCCTGGGAATAGAGAGCACGCGACGGATCCCTTTACC
CATTCTACTGTCTCATCTCAGTCAGCTGCAGGGCTTCTGCCTAGGAGAGACATTTGCCACAGAGCTGGGA
TGGCTGCTGTTGCAGGAGCCTGTTCTTGGAAAACCAGAATTGTGGAGCCAGGATGAAATAGAGCAAGCTG
GACGCCTAGTATTCACTCTGTCTGCTGAGGCTATTTCCTCGATCCCCAGGGAGGCTTTGGGCCCAGAGAC
ACTGGAGAGGCTTCTGGGAAAGCATCAAAGCTGGGAGCAGAGCAGAGTGGGCCATCTGTGTGGGGAGTCA
CAGCTTGCCCACAAGAAAGCAGCTCTGGTAGCTGGGATTGTGCATCCAGCTGCTGAGGGTCTCCAAGAGC
CTGTACCAAACTGTGCAGACATACGGGGAACCTTCCCAGCGGCCTGGTCTGCGACACAAATCTCAGAGAT
GGAACTCTCAGACTTTGAAGACTGCCTGTCACTATTTGCTGGAGATCCAGGACTTGGTCCTGAGGAACTA
CGGGCAGCCATGGGCAAGGCCAAGCAGTTGTGGGGTCCCCCTCGAGGATTCCGTCCTGAGCAGATCTTGC
AGCTGGGCCGTCTCCTGATAGGTCTAGGAGAACGGGAACTGCAGGAGCTTACCTTGGTGGACTGGGGTGT
GCTGAGCAGCCTGGGGCAAATAGATGGCTGGAGTTCCATGCAGCTCCGAGCCGTGGTCTCCAGTTTCCTA
AGGCAGAGTGGTCGGCATGTGAGCCACCTGGACTTCATTTATCTGACAGCACTGGGTTACACAGTCTGTG
GATTGCGACCAGAGGAGTTACAGCACATCAGCAGTTGGGAGTTTAGCCAAGCAGCTCTCTTCCTGGGTAG
CTTGCATCTCCCGTGCTCTGAGGAACAGCTGGAAGTTCTGGCCTATCTCCTTGTGTTGCCTGGTGGCTTT
GGCCCAGTCAGTAACTGGGGGCCTGAGATCTTCACTGAAATTGGCACAATAGCAGCTGGCATCCCAGACC
TGGCTCTTTCAGCATTACTGCGGGGACAGATCCAAGGCCTGACTCCTCTTGCCATTTCTGTCATTCCTGC
TCCCAAGTTTGCAGTGGTCTTCAACCCCATCCAGTTATCTAGTCTCACCAGGGGTCAGGCCGTAGCTGTT
ACTCCTGAACAGCTGGCCTATCTGAGTCCTGAGCAGCGGCGAGCAGTTGCATGGGCCCAACACGAAGGGA
AGGAGATCCCAGAGCAGCTGGGTCGAAACTCAGCCTGGGGTCTCTACGACTGGTTCCAAGCCTCCTGGGC
CCTGGCATTGCCCGTCAGCATTTTTGGCCACCTATTATGA

Translation (1809 aa):
MALSLQPQLLLLLSLLPQEVTSAPTGPQSLDAGLSLLKSFVATLDQAPQRSLSQSRFSAFLANISSSFQL
GRMGEGPVGEPPPLQPPALRLHDFLVTLRGSPDWEPMLGLLGDVLALLGQEQTPRDFLVHQAGVLGGLVE
ALLGALVPGGPPAPTRPPCTRDGPSDCVLAADWLPSLMLLLEGTRWQALVQLQPSVDPTNATGLDGREPA
PHFLQGLLGLLTPAGELGSEEALWGGLLRTVGAPLYAAFQEGLLRVTHSLQDEVFSIMGQPEPDASGQCQ
GGNLQQLLLWGMRNNLSWDARALGFLSGSPPPPPALLHCLSRGVPLPRASQPAAHISPRQRRAISVEALC
ENHSGPEPPYSISNFSIYLLCQHIKPATPRPPPTTPRPPPTTPQPPPTTTQPIPDTTQPPPVTPRPPPTT
PQPPPSTAVICQTAVWYAVSWAPGARGWLQACHDQFPDQFLDMICGNLSFSALSGPSRPLVKQLCAGLLP
PPTSCPPGLIPVPLTPEIFWGCFLENETLWAERLCVEDSLQAVPPRNQAWVQHVCRGPTLDATDFPPCRV
GPCGERCPDGGSFLLMVCANDTLYEALVPFWAWLAGQCRISRGGNDTCFLEGMLGPLLPSLPPLGPSPLC
LAPGPFLLGMLSQLPRCQSSVPALAHPTRLHYLLRLLTFLLGPGTGGAETQGMLGQALLLSSLPDNCSFW
DAFRPEGRRSVLRTVGEYLQREEPTPPGLDSSLSLGSGMSKMELLSCFSPVLWDLLQREKSVWALRTLVK
AYLRMPPEDLQQLVLSAEMEAAQGFLTLMLRSWAKLKVQPSEEQAMGRLTALLLQRYPRLTSQLFIDMSP
LIPFLAVPDLMRFPPSLLANDSVLAAIRDHSSGMKPEQKEALAKRLLAPELFGEVPDWPQELLWAALPLL
PHLPLESFLQLSPHQIQALEDSWPVADLGPGHARHVLRSLVNQSMEDGEEQVLRLGSLACFLSPEELQSL
VPLSDPMGPVEQGLLECAANGTLSPEGRVAYELLGVLRSSGGTVLSPRELRVWAPLFPQLGLRFLQELSE
TQLRAMLPALQGASVTPAQAVLLFGRLLPKHDLSLEELCSLHPLLPGLSPQTLQAIPKRVLVGACSCLGP
ELSRLSACQIAALLQTFRVKDGVKNMGAAGAGSAVCIPGQPTTWPDCLLPLLPLKLLQLDAAALLANRRL
YRQLPWSEQQAQFLWKKMQVPTNLSLRNLQALGNLAGGMTCEFLQQISSMVDFLDVVHMLYQLPTGVRES
LRACIWTELQRRMTMPEPELTTLGPELSELDTKLLLDLPIQLMDRLSNDSIMLVVEMVQGAPEQLLALTP
LHQTALAERALKNLAPKETPISKEVLETLGPLVGFLGIESTRRIPLPILLSHLSQLQGFCLGETFATELG
WLLLQEPVLGKPELWSQDEIEQAGRLVFTLSAEAISSIPREALGPETLERLLGKHQSWEQSRVGHLCGES
QLAHKKAALVAGIVHPAAEGLQEPVPNCADIRGTFPAAWSATQISEMELSDFEDCLSLFAGDPGLGPEEL
RAAMGKAKQLWGPPRGFRPEQILQLGRLLIGLGERELQELTLVDWGVLSSLGQIDGWSSMQLRAVVSSFL
RQSGRHVSHLDFIYLTALGYTVCGLRPEELQHISSWEFSQAALFLGSLHLPCSEEQLEVLAYLLVLPGGF
GPVSNWGPEIFTEIGTIAAGIPDLALSALLRGQIQGLTPLAISVIPAPKFAVVFNPIQLSSLTRGQAVAV
TPEQLAYLSPEQRRAVAWAQHEGKEIPEQLGRNSAWGLYDWFQASWALALPVSIFGHLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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