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Report for CCDS16721.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16721.1 Public Mus musculus 2 Chchd5 23 108 98 CCDS HistoryNCBI Gene:66170Re-query CCDS DB by CCDS ID:16721.1Re-query CCDS DB by GeneID:66170See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16721.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035481.4 ENSMUSP00000044253.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035481.4Link to Ensembl Protein Viewer:ENSMUSP00000044253.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000035481Re-query CCDS DB by Protein ID:ENSMUSP00000044253
Original member Current member NCBI NM_025395.3 NP_079671.1 Accepted alive Link to Nucleotide Sequence:NM_025395.3Link to Protein Sequence:NP_079671.1Re-query CCDS DB by Nucleotide ID:NM_025395Re-query CCDS DB by Protein ID:NP_079671Link to BLAST:NP_079671.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079671.1 110 Q9CQP3 110 100% 0 0

Chromosomal Locations for CCDS 16721.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 129129856 129129857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 129130178 129130318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 129130401 129130566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 129133275 129133298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (333 nt):
ATGCAGGCAGCCCTGGAAGTCACTGCTCGATACTGCAGCCGAGAGCTGGATCAGTATGGCCAATGTGTGG
CAGCCAAGCCAGAGTCGTGGCATCGAGATTGTCACCACCTTAAGATGAGCATTGCTCGCTGCACGTCCTC
CCACCCGATCATCCGCCAGATCCGCCAGGCCTGTGCTGAGCCCTTTGAAGCCTTTGAGAAGTGTCTTCGC
TTGAATGAGGCAGCAGTGGGCAACTGTGCTGAACACATGCGCCGCTTCCTGCAGTGTGCAGAGCAGGTGC
AGCCACCAAGTTCACCCACAACTGGAGAGGCACAGCCCCTGCCTGCCTCCTGA

Translation (110 aa):
MQAALEVTARYCSRELDQYGQCVAAKPESWHRDCHHLKMSIARCTSSHPIIRQIRQACAEPFEAFEKCLR
LNEAAVGNCAEHMRRFLQCAEQVQPPSSPTTGEAQPLPAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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