NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS16780.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16780.1 Public Mus musculus 2 Lrrn4 23 108 98 CCDS HistoryNCBI Gene:320974Re-query CCDS DB by CCDS ID:16780.1Re-query CCDS DB by GeneID:320974See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 16780.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049787.2 ENSMUSP00000057005.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049787.2Link to Ensembl Protein Viewer:ENSMUSP00000057005.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000049787Re-query CCDS DB by Protein ID:ENSMUSP00000057005
Original member Current member NCBI NM_177303.4 NP_796277.2 Accepted alive Link to Nucleotide Sequence:NM_177303.4Link to Protein Sequence:NP_796277.2Re-query CCDS DB by Nucleotide ID:NM_177303Re-query CCDS DB by Protein ID:NP_796277Link to BLAST:NP_796277.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_796277.2 733 P59383 733 100% 0 0

Chromosomal Locations for CCDS 16780.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 132869700 132870903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132872027 132872158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132878013 132878217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132879235 132879895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2202 nt):
ATGCGGTGGACGCTGATGCTGCAGCTGCTGCAGCTCCTGCTACAACTGCTGATGGCGCAGAGCCAGAGCC
TG
GAAAGGATCTCCCAGGACCGGATCCCCCTCTTCCGACTCACTCAGCAGGGAGACTGGGACAGCCTCGA
C
CGCCACCCTACCGACTCTCTCTGTGTAGGACTCCCCGCCGCGGGAGTCACCACTCTGAACTTGGCGAAC
CGC
AGCCTGGAGAGCCTGCCTAGCTGCCTGCCGCGCACGCTGCGCAGCCTCGATGGCAGCCACAACCTGC
TG
CGCGCCCTTAGCGAGCCTGTGCTCGGCCGCCTGCCCGAGCTGCGCGTACTCACGCTGCACCACAACCG
C
ATCTCCGTGCTACACTGGGGCCGTGACACGCTGGCCGAGCTGCGTGAGCTCGACCTCAGTCACAACCTG
CTG
ACCGAGCTGCCGCCCTGCGCGGGGCCCTCGGGGAGCAGCCTGCGCTCGCTGGCGCTGGCCGGGAACC
CA
CTGCGAGCGCTGCTGCCACGGACCTTTGCATGCTTCCCAGCGCTGCGGCTTCTCAACCTCTCCTGCAG
C
GAGCTGGGCCACATCGCCCAGGAGGCATTCGCGGGGGTGGACGGTGGGCCCCTGGCGGCACTGGAGCTC
TTG
GATCTGAGCGGCACGAGCCTAGAAAGAGTTGAGTCTGGGTGGATCAGAAACCTGCCAAAGCTCAAGT
CC
CTCTTCCTGAGAAAGATGCCCAGGCTGAAGACACTGGAGGGAGACATTTTCAAGATGACTCCCAACCT
G
CGGCAGCTGGATTGTGGAGACTCTCCAGCACTTACTTCTGTTCACACAGAGATCTTTCAAGACACACCC
AAT
CTACAAGTCCTTCAGTTTCAGAACTGCAACTTGAGTTCCTTTGGTCCTTGGAATTCCTCCCAGGTCT
TG
TCCGTCAGTCTCTTTGGCAACCCTCTCATTTGCAGCTGTGAGCTGGCTTGGCTTCTCGTGGATGTCAA
C
AAAACTGTCTTACACAGGGCAGCTGATACCATGTGTGAGCCTGCTTTAGGATCCACGGGCCCCTTCTCA
GGC
CCTCTCTCCCTCTCCCACCTGTCTAATGTGTGCAGGTCAGACCAAAGCACCACCCTCCTGCCTTCAA
AC
CCAGGCCGCTTCGATCATTCAGTTTTTGCACCACGGATACAGGGGCCTTCCATTGAACAGAGCACGGC
C
TTGTCTGCTCAGCCTGGAGGAAGCCAACAAAATATCACCAAGGTCCCTTCCCTCACCATGACTTCCCCC
ACA
CAAGGATCATGGATGTATAAAGATGCTTCAGAGGAAACTGCCCAGTCCACTAACTCTGAGCTAGTTT
AT
AGTCCTTCCAGGGCTCTGCCTGGTGCTGCCAGTTCTGGGGCAGAGCAGACTGCCACACATATCCTTGA
G
CCTAATATTTCATCTGCCTCTACCCCATTAGTCAGCAAGTACCTTGAACCCTTGCCTACTTCACCAAAC
CCC
AGGAGCTTACCTCAGACCAAGCAGAGGACACAAGCCACGCCCAGGGCTCTCCACACAGACCCTCCAC
AG
GATGAGATTCCAGTTTTGCTGTTAGATGATGACAGCGAGGAGGAGGAGACTCGGGACCAGGTGGCGGC
A
CCTCCCCAGGACGTCTCTTGTGAATACCACCCCTGCAAGCATCTGCAGACCCCGTGCGCAGAGCTGCAG
AGG
CGCTTCAGATGCCGTTGCCCTGGTCTCAGTGGGGAGGATACCACTCCAGACCCTCCCACGCTGCAGG
GG
GTGTCAGAGGTGACTGACACATCAGTGCTCGTCCACTGGTGTGCCCCCAACTCAGTGGTGCTCTGGTA
T
CAGATCCACTATGTGGCAGAAGGACGATCTGGGAATCAATCCGTAGTGGACATCTATGCTACTGCCAGG
CAG
CACCCCCTGTACAAGCTGACACCTGGCACCACCTACCATGTGTGTGTACTGGCAGCCAACAGGGCTG
GC
CTGAGCCAGTCACAGACCTCAGGCTGGAGGAGGTCATGTGCCACTTTCACAACCAAGCCCAGCTCTGT
G
GTCATCTTCTGGGGACTGTGTACCGCCAGTGGCCTGTTACTGGTTAGCACCCTGGTGCTGTCTGTGTGT
CTC
TGGAGGCAGCGCTGGAAGCCACACAGGCAGTTCTACGACACACACCTGGTGGCCTTCAAAAACCCAG
CC
AGAGCTGAGGAAGTAACTCAGTGGGAGTGA


Translation (733 aa):
MRWTLMLQLLQLLLQLLMAQSQSLERISQDRIPLFRLTQQGDWDSLDRHPTDSLCVGLPAAGVTTLNLAN
R
SLESLPSCLPRTLRSLDGSHNLLRALSEPVLGRLPELRVLTLHHNRISVLHWGRDTLAELRELDLSHNL
L
TELPPCAGPSGSSLRSLALAGNPLRALLPRTFACFPALRLLNLSCSELGHIAQEAFAGVDGGPLAALEL
L
DLSGTSLER
VESGWIRNLPKLKSLFLRKMPRLKTLEGDIFKMTPNLRQLDCGDSPALTSVHTEIFQDTP
N
LQVLQFQ
NCNLSSFGPWNSSQVLSVSLFGNPLICSCELAWLLVDVNKTVLHRAADTMCEPALGSTGPFS
G
PLSLSHLSNVCRSDQSTTLLPSNPGRFDHSVFAPRIQGPSIEQSTALSAQPGGSQQNITKVPSLTMTSP
T
QGSWMYKDASEETAQSTNSELVYSPSRALPGAASSGAEQTATHILEPNISSASTPLVSKYLEPLPTSPN
P
RSLPQTKQRTQATPRALHTDPPQDEIPVLLLDDDSEEEETRDQVAAPPQDVSCEYHPCKHLQTPCAELQ
R
RFRCRCPGLSGEDTTPDPPTLQGVSEVTDTSVLVHWCAPNSVVLWYQIHYVAEGRSGNQSVVDIYATAR
Q
HPLYKLTPGTTYHVCVLAANRAGLSQSQTSGWRRSCATFTTKPSSVVIFWGLCTASGLLLVSTLVLSVC
L
WRQRWKPHRQFYDTHLVAFKNPARAEEVTQWE




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser